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annotate tool_dependencies.xml @ 0:8817d3a35fac draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
author rnateam
date Tue, 16 Jun 2015 10:54:16 -0400
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children 95526e9e3808
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8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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1 <?xml version="1.0"?>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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2 <tool_dependency>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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3 <package name="mafft" version="7.221">
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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4 <install version="1.0">
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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5 <actions>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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6 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/MAFFT/mafft-7.221-with-extensions-src.tgz</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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7 <action type="change_directory">./core</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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8 <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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9 <action type="shell_command">make clean; make; make install</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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10 <action type="change_directory">../extensions</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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11 <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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12 <action type="shell_command">make clean; make; make install</action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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13 <action type="set_environment">
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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15 </action>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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16 </actions>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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17 </install>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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18 <readme>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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19 </readme>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
rnateam
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20 </package>
8817d3a35fac planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 4e6896fc58abc9a6f90d97aaf80fde006a071a7d-dirty
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21 </tool_dependency>