Mercurial > repos > recetox > retip_train

annotate retip_train.xml @ 7:fc3e026406c5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 66741485c24076df17e4a87bdaa53ec04d1c8792"
author recetox
date Tue, 09 Mar 2021 18:31:08 +0000
parents 9012a9dba1db
children e7771b3d6a40
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
9012a9dba1db "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 683f472a44f296d65cf572a5e720839fc4c0141e-dirty"
recetox
parents: 2
diff changeset
1 <tool id="retip_train" name="Retip training" version="@TOOL_VERSION@+galaxy3">
0
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
2 <description>the Keras model to predict retention times</description>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
3 <macros>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
4 <import>macros.xml</import>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
5 </macros>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
6 <expand macro="requirements"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
2
6462a0ac9c29 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
recetox
parents: 1
diff changeset
8 /run.sh trainKeras.R '$descr_train' 'model.h5'
0
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
9 ]]>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
10 </command>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
11 <inputs>
2
6462a0ac9c29 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
recetox
parents: 1
diff changeset
12 <param name="descr_train" label="Select Descriptors.h5 Dataset" type="data" format="h5"
0
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
13 optional="false"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
14 </inputs>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
15 <outputs>
2
6462a0ac9c29 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
recetox
parents: 1
diff changeset
16 <data format="h5" name="output1" label="Model.h5 Dataset" from_work_dir="model.h5"/>
0
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
17 </outputs>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
18 <tests>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
19 <test expect_num_outputs="1">
2
6462a0ac9c29 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
recetox
parents: 1
diff changeset
20 <param name="descr_train" value="descriptors.h5"/>
6462a0ac9c29 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 9f9b92c89606c662e540573375241a5b99cefe80"
recetox
parents: 1
diff changeset
21 <output name="output1" file="model.h5" ftype="h5" compare="sim_size" delta="1000"/>
0
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
22 </test>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
23 </tests>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
24 <help><![CDATA[
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
25 .. class:: infomark
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
26
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
27 This tool uses ALMA mater: Advanced Learning Machine Algorithms to **train models**.
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
28
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
29 @HELP@
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
30 ]]>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
31 </help>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
32 <expand macro="citations"/>
baa7c8768036 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/retip commit 931ccc430a2b20eebd174d29b45bf3fa18e85f58"
recetox
parents:
diff changeset
33 </tool>