Mercurial > repos > rdvelazquez > rdv_fasta_tools
annotate filterFasta.xml @ 0:146ffed44f3f draft default tip
planemo upload
| author | rdvelazquez |
|---|---|
| date | Wed, 20 Mar 2019 22:17:40 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool id="filterFastaOnNumNonGapChars" version="1.0.0" name="filterFastaOnNumNonGapChars"> | |
| 3 <description>Remove sequences from a fasta file if less than n | |
| 4 non-gap characters</description> | |
| 5 <stdio> | |
| 6 <exit_code range="1:"/> | |
| 7 </stdio> | |
| 8 <version_command/> | |
| 9 <command><![CDATA[ | |
| 10 $__tool_directory__/filterFasta '$input_fasta' '$minimum_number_of_characters' '$filtered_fasta' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="input_fasta" label="Input FASTA" type="data" format="fasta"/> | |
| 14 <param label="min_num_chars" name="minimum_number_of_characters" type="integer" value="30"/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="fasta" name="filtered_fasta"/> | |
| 18 </outputs> | |
| 19 </tool> |