Mercurial > repos > rdvelazquez > rdv_fasta_tools

diff filterFasta.xml @ 0:146ffed44f3f draft default tip

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planemo upload
author rdvelazquez
date Wed, 20 Mar 2019 22:17:40 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/filterFasta.xml	Wed Mar 20 22:17:40 2019 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool id="filterFastaOnNumNonGapChars" version="1.0.0" name="filterFastaOnNumNonGapChars">
+  <description>Remove sequences from a fasta file if less than n
+  non-gap characters</description>
+  <stdio>
+    <exit_code range="1:"/>
+  </stdio>
+  <version_command/>
+  <command><![CDATA[
+                $__tool_directory__/filterFasta '$input_fasta' '$minimum_number_of_characters' '$filtered_fasta'
+    ]]></command>
+  <inputs>
+    <param name="input_fasta" label="Input FASTA" type="data" format="fasta"/>
+    <param label="min_num_chars" name="minimum_number_of_characters" type="integer" value="30"/>
+  </inputs>
+  <outputs>
+    <data format="fasta" name="filtered_fasta"/>
+  </outputs>
+</tool>