Mercurial > repos > rdvelazquez > hyphy_fubar
diff macros.xml @ 9:55dd19bffb00 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'17327d46ff082448f0a0fc3b6827f5d9d6124a10\n'-dirty
| author | rdvelazquez |
|---|---|
| date | Tue, 08 Jan 2019 10:59:21 -0500 |
| parents | b19b7712ab0a |
| children | da4fd8c3ad0c |
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--- a/macros.xml Tue Dec 04 11:13:15 2018 -0500 +++ b/macros.xml Tue Jan 08 10:59:21 2019 -0500 @@ -1,25 +1,21 @@ <?xml version="1.0"?> <macros> - <xml name="citations"> - <citations> - <citation type="doi">10.1093/bioinformatics/bti079</citation> - <yield/> - </citations> - </xml> - <token name="@VERSION@">2.3.14</token> - <xml name="requirements"> - <requirements> - <requirement type="package" version="@VERSION@"> - hyphy</requirement> - <yield/> - </requirements> - </xml> - <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` && + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/bti079</citation> + <yield /> + </citations> + </xml> + <token name="@VERSION@">2.3.14</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">hyphy</requirement> + <yield /> + </requirements> + </xml> + <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` && export HYPHY_PATH=`dirname \$HYPHY` && export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` && -cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token> - <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` && -export HYPHYMPI_PATH=`dirname \$HYPHYMPI` && -export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` && -cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token> -</macros> +cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]> + </token> +</macros> \ No newline at end of file