Mercurial > repos > rdvelazquez > hyphy_fubar

comparison macros.xml @ 9:55dd19bffb00 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'17327d46ff082448f0a0fc3b6827f5d9d6124a10\n'-dirty
author rdvelazquez
date Tue, 08 Jan 2019 10:59:21 -0500
parents b19b7712ab0a
children da4fd8c3ad0c
comparison
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8:257d1d617dfb 9:55dd19bffb00
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="citations"> 3 <xml name="citations">
4 <citations> 4 <citations>
5 <citation type="doi">10.1093/bioinformatics/bti079</citation> 5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
6 <yield/> 6 <yield />
7 </citations> 7 </citations>
8 </xml> 8 </xml>
9 <token name="@VERSION@">2.3.14</token> 9 <token name="@VERSION@">2.3.14</token>
10 <xml name="requirements"> 10 <xml name="requirements">
11 <requirements> 11 <requirements>
12 <requirement type="package" version="@VERSION@"> 12 <requirement type="package" version="@VERSION@">hyphy</requirement>
13 hyphy</requirement> 13 <yield />
14 <yield/> 14 </requirements>
15 </requirements> 15 </xml>
16 </xml> 16 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
18 export HYPHY_PATH=`dirname \$HYPHY` && 17 export HYPHY_PATH=`dirname \$HYPHY` &&
19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` && 18 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token> 19 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
21 <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` && 20 </token>
22 export HYPHYMPI_PATH=`dirname \$HYPHYMPI` &&
23 export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` &&
24 cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token>
25 </macros> 21 </macros>