Mercurial > repos > proteore > proteore_reactome
changeset 3:988a6f43acdb draft
planemo upload commit 49c20fec48bcda2dec68fe4b26c9fb1c7554aefe-dirty
| author | proteore |
|---|---|
| date | Tue, 11 Dec 2018 09:20:46 -0500 |
| parents | db63d069b5e6 |
| children | 113cce3fc379 |
| files | reactome_analysis.py reactome_analysis.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/reactome_analysis.py Tue Dec 11 07:46:12 2018 -0500 +++ b/reactome_analysis.py Tue Dec 11 09:20:46 2018 -0500 @@ -55,7 +55,7 @@ else: idens = [x.split("\t")[int(identifiers[3].replace("c", ""))-1] for x in mq] ids = "\n".join(id_valid(idens)[0]) - json_string = os.popen("curl -H \"Content-Type: text/plain\" -d \"$(printf '%s')\" -X POST --url www.reactome.org/AnalysisService/identifiers/\?pageSize\=1\&page\=1 2> /dev/null" % ids).read() + json_string = os.popen("curl -H \"Content-Type: text/plain\" -d \"$(printf '%s')\" -X POST --url www.reactome.org/AnalysisService/identifiers/\?pageSize\=1\&page\=1 2> stderr" % ids).read() if len(id_valid(idens)[1]) > 0: trash = id_valid(idens)[1] #print(json_string)
--- a/reactome_analysis.xml Tue Dec 11 07:46:12 2018 -0500 +++ b/reactome_analysis.xml Tue Dec 11 09:20:46 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="reactome_analysis" name="Reactome" version="2018.12.11"> +<tool id="reactome_analysis" name="Reactome" version="2018.12.11.1"> <description>display your protein list on the Reactome pathway browser</description> <requirements> </requirements>