# HG changeset patch # User proteore # Date 1544538046 18000 # Node ID 988a6f43acdbea314ddddc23eb7692453efd8551 # Parent db63d069b5e635ba813c9a084bb7da9ee4aff49a planemo upload commit 49c20fec48bcda2dec68fe4b26c9fb1c7554aefe-dirty diff -r db63d069b5e6 -r 988a6f43acdb reactome_analysis.py --- a/reactome_analysis.py Tue Dec 11 07:46:12 2018 -0500 +++ b/reactome_analysis.py Tue Dec 11 09:20:46 2018 -0500 @@ -55,7 +55,7 @@ else: idens = [x.split("\t")[int(identifiers[3].replace("c", ""))-1] for x in mq] ids = "\n".join(id_valid(idens)[0]) - json_string = os.popen("curl -H \"Content-Type: text/plain\" -d \"$(printf '%s')\" -X POST --url www.reactome.org/AnalysisService/identifiers/\?pageSize\=1\&page\=1 2> /dev/null" % ids).read() + json_string = os.popen("curl -H \"Content-Type: text/plain\" -d \"$(printf '%s')\" -X POST --url www.reactome.org/AnalysisService/identifiers/\?pageSize\=1\&page\=1 2> stderr" % ids).read() if len(id_valid(idens)[1]) > 0: trash = id_valid(idens)[1] #print(json_string) diff -r db63d069b5e6 -r 988a6f43acdb reactome_analysis.xml --- a/reactome_analysis.xml Tue Dec 11 07:46:12 2018 -0500 +++ b/reactome_analysis.xml Tue Dec 11 09:20:46 2018 -0500 @@ -1,4 +1,4 @@ - + display your protein list on the Reactome pathway browser