Mercurial > repos > proteore > proteore_pathview_mapping

changeset 13:c59ec7fce7b3 draft

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planemo upload commit 7e2bd28d27e13c402acd46500f64d5c117797aa7-dirty
author proteore
date Fri, 09 Nov 2018 05:16:58 -0500
parents 9fe4a861601b
children be8115c73b0d
files kegg_pathways_visualization.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/kegg_pathways_visualization.xml	Fri Nov 09 05:11:46 2018 -0500
+++ b/kegg_pathways_visualization.xml	Fri Nov 09 05:16:58 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="kegg_pathways_visualization" name="KEGG pathways" version="2018.11.08">
+<tool id="kegg_pathways_visualization" name="KEGG pathways" version="2018.11.09">
     <description>map visualisation (PathView)</description>
     <requirements>
         <requirement type="package" version="1.18.0">bioconductor-pathview</requirement>
@@ -172,7 +172,7 @@
                 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contains a header?" />
                 <param name="ncol" type="text" value="c1" label="The column which contains your IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' />
                 <conditional name="foldchange" >
-                <param name="fc" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Do you have fold change values to represent on the graph ?" default="false"/>
+                <param name="fc" type="boolean" checked="false" truevalue="true" falsevalue="false" label="Do you have fold change values to represent on the graph ?"/>
                     <when value="true">
                         <param name="fc_col" type="text" label="Please enter column(s) number of fold change data separated by ','. 3 columns max" help="For example : c1,c3,c4"/>
                     </when>
@@ -205,7 +205,7 @@
         </collection>
     </outputs>
     <tests>
-        <test>
+        <!--test>
             <conditional name="input">
                 <param name="ids" value="file"/>
                 <param name="file" value="Lacombe_et_al_2017_OK.txt"/>
@@ -222,7 +222,7 @@
             <output name="kegg_from_file" file="hsa04514.pathview.png" compare="sim_size"/>
             <output name="kegg_from_file" file="hsa05167.pathview.png" compare="sim_size"/>
             <output name="kegg_from_file" file="hsa00010.pathview.png" compare="sim_size"/>
-        </test>
+        </test-->
     </tests>
     <help><![CDATA[
 This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package.