Mercurial > repos > proteore > proteore_pathview_mapping

annotate README.rst @ 5:1e9db71d46f7 draft

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author proteore
date Fri, 24 Aug 2018 08:32:17 -0400
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1 Wrapper for Pathview tool
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2 =============================
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4 **Authors**
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6 David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
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8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
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10 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
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12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
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14 =============================
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16 This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package.
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18 Select an input file containing ids in a column, set header and column number or copy/paste your ids.
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20 Select your identifier type and a species of interest (for now only human available).
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22 Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s)
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24 Select the graph format : KEGG or graphviz
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26 Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways.
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28 Output : One file (png or pdf) for each selected pathway.