diff README.rst @ 0:097bb3ed2b4d draft

planemo upload commit 2e441b4969ae7cf9aeb227a1d47c43ef7268a5e6-dirty
author proteore
date Wed, 22 Aug 2018 11:30:23 -0400
parents
children 33c9bd75882a
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Wed Aug 22 11:30:23 2018 -0400
@@ -0,0 +1,28 @@
+Wrapper for Pathview tool
+=============================
+
+**Authors**
+
+David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+
+Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
+
+This work has been partially funded through the French National Agency for Research (ANR) IFB project.
+
+Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+
+=============================
+
+This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package.
+
+Select an input file containing ids in a column, set header and column number or copy/paste your ids. 
+
+Select your identifier type and a species of interest (for now only human available). 
+
+Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s)
+
+Select the graph format : KEGG or graphviz
+
+Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways.
+
+Output : One file (png or pdf) for each selected pathway. 
\ No newline at end of file