Mercurial > repos > proteore > proteore_pathview_mapping
diff README.rst @ 0:097bb3ed2b4d draft
planemo upload commit 2e441b4969ae7cf9aeb227a1d47c43ef7268a5e6-dirty
| author | proteore |
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| date | Wed, 22 Aug 2018 11:30:23 -0400 |
| parents | |
| children | 33c9bd75882a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Wed Aug 22 11:30:23 2018 -0400 @@ -0,0 +1,28 @@ +Wrapper for Pathview tool +============================= + +**Authors** + +David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR + +Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform + +This work has been partially funded through the French National Agency for Research (ANR) IFB project. + +Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. + +============================= + +This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package. + +Select an input file containing ids in a column, set header and column number or copy/paste your ids. + +Select your identifier type and a species of interest (for now only human available). + +Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) + +Select the graph format : KEGG or graphviz + +Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways. + +Output : One file (png or pdf) for each selected pathway. \ No newline at end of file
