changeset 5:1e9db71d46f7 draft

planemo upload commit 3920c1fdf5906ee60e7f493b896df83a447a94d8-dirty
author proteore
date Fri, 24 Aug 2018 08:32:17 -0400
parents 79e95b3e608f
children 059f17f98ab5
files hsa_pathways.loc.sample hsa_pathways.tsv.sample mmu_pathways.loc.sample mmu_pathways.tsv.sample
diffstat 4 files changed, 656 insertions(+), 656 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hsa_pathways.loc.sample	Fri Aug 24 08:32:17 2018 -0400
@@ -0,0 +1,330 @@
+#value	name
+hsa00010	Glycolysis / Gluconeogenesis
+hsa00020	Citrate cycle (TCA cycle)
+hsa00030	Pentose phosphate pathway
+hsa00040	Pentose and glucuronate interconversions
+hsa00051	Fructose and mannose metabolism
+hsa00052	Galactose metabolism
+hsa00053	Ascorbate and aldarate metabolism
+hsa00061	Fatty acid biosynthesis
+hsa00062	Fatty acid elongation
+hsa00071	Fatty acid degradation
+hsa00072	Synthesis and degradation of ketone bodies
+hsa00100	Steroid biosynthesis
+hsa00120	Primary bile acid biosynthesis
+hsa00130	Ubiquinone and other terpenoid-quinone biosynthesis
+hsa00140	Steroid hormone biosynthesis
+hsa00190	Oxidative phosphorylation
+hsa00220	Arginine biosynthesis
+hsa00230	Purine metabolism
+hsa00232	Caffeine metabolism
+hsa00240	Pyrimidine metabolism
+hsa00250	Alanine, aspartate and glutamate metabolism
+hsa00260	Glycine, serine and threonine metabolism
+hsa00270	Cysteine and methionine metabolism
+hsa00280	Valine, leucine and isoleucine degradation
+hsa00290	Valine, leucine and isoleucine biosynthesis
+hsa00310	Lysine degradation
+hsa00330	Arginine and proline metabolism
+hsa00340	Histidine metabolism
+hsa00350	Tyrosine metabolism
+hsa00360	Phenylalanine metabolism
+hsa00380	Tryptophan metabolism
+hsa00400	Phenylalanine, tyrosine and tryptophan biosynthesis
+hsa00410	beta-Alanine metabolism
+hsa00430	Taurine and hypotaurine metabolism
+hsa00440	Phosphonate and phosphinate metabolism
+hsa00450	Selenocompound metabolism
+hsa00471	D-Glutamine and D-glutamate metabolism
+hsa00472	D-Arginine and D-ornithine metabolism
+hsa00480	Glutathione metabolism
+hsa00500	Starch and sucrose metabolism
+hsa00510	N-Glycan biosynthesis
+hsa00511	Other glycan degradation
+hsa00512	Mucin type O-glycan biosynthesis
+hsa00514	Other types of O-glycan biosynthesis
+hsa00515	Mannose type O-glycan biosynthesis
+hsa00520	Amino sugar and nucleotide sugar metabolism
+hsa00524	Neomycin, kanamycin and gentamicin biosynthesis
+hsa00531	Glycosaminoglycan degradation
+hsa00532	Glycosaminoglycan biosynthesis
+hsa00533	Glycosaminoglycan biosynthesis
+hsa00534	Glycosaminoglycan biosynthesis
+hsa00561	Glycerolipid metabolism
+hsa00562	Inositol phosphate metabolism
+hsa00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+hsa00564	Glycerophospholipid metabolism
+hsa00565	Ether lipid metabolism
+hsa00590	Arachidonic acid metabolism
+hsa00591	Linoleic acid metabolism
+hsa00592	alpha-Linolenic acid metabolism
+hsa00600	Sphingolipid metabolism
+hsa00601	Glycosphingolipid biosynthesis
+hsa00603	Glycosphingolipid biosynthesis
+hsa00604	Glycosphingolipid biosynthesis
+hsa00620	Pyruvate metabolism
+hsa00630	Glyoxylate and dicarboxylate metabolism
+hsa00640	Propanoate metabolism
+hsa00650	Butanoate metabolism
+hsa00670	One carbon pool by folate
+hsa00730	Thiamine metabolism
+hsa00740	Riboflavin metabolism
+hsa00750	Vitamin B6 metabolism
+hsa00760	Nicotinate and nicotinamide metabolism
+hsa00770	Pantothenate and CoA biosynthesis
+hsa00780	Biotin metabolism
+hsa00785	Lipoic acid metabolism
+hsa00790	Folate biosynthesis
+hsa00830	Retinol metabolism
+hsa00860	Porphyrin and chlorophyll metabolism
+hsa00900	Terpenoid backbone biosynthesis
+hsa00910	Nitrogen metabolism
+hsa00920	Sulfur metabolism
+hsa00970	Aminoacyl-tRNA biosynthesis
+hsa00980	Metabolism of xenobiotics by cytochrome P450
+hsa00982	Drug metabolism
+hsa00983	Drug metabolism
+hsa01040	Biosynthesis of unsaturated fatty acids
+hsa01100	Metabolic pathways
+hsa01200	Carbon metabolism
+hsa01210	2-Oxocarboxylic acid metabolism
+hsa01212	Fatty acid metabolism
+hsa01230	Biosynthesis of amino acids
+hsa01521	EGFR tyrosine kinase inhibitor resistance
+hsa01522	Endocrine resistance
+hsa01523	Antifolate resistance
+hsa01524	Platinum drug resistance
+hsa02010	ABC transporters
+hsa03008	Ribosome biogenesis in eukaryotes
+hsa03010	Ribosome
+hsa03013	RNA transport
+hsa03015	mRNA surveillance pathway
+hsa03018	RNA degradation
+hsa03020	RNA polymerase
+hsa03022	Basal transcription factors
+hsa03030	DNA replication
+hsa03040	Spliceosome
+hsa03050	Proteasome
+hsa03060	Protein export
+hsa03320	PPAR signaling pathway
+hsa03410	Base excision repair
+hsa03420	Nucleotide excision repair
+hsa03430	Mismatch repair
+hsa03440	Homologous recombination
+hsa03450	Non-homologous end-joining
+hsa03460	Fanconi anemia pathway
+hsa04010	MAPK signaling pathway
+hsa04012	ErbB signaling pathway
+hsa04014	Ras signaling pathway
+hsa04015	Rap1 signaling pathway
+hsa04020	Calcium signaling pathway
+hsa04022	cGMP-PKG signaling pathway
+hsa04024	cAMP signaling pathway
+hsa04060	Cytokine-cytokine receptor interaction
+hsa04062	Chemokine signaling pathway
+hsa04064	NF-kappa B signaling pathway
+hsa04066	HIF-1 signaling pathway
+hsa04068	FoxO signaling pathway
+hsa04070	Phosphatidylinositol signaling system
+hsa04071	Sphingolipid signaling pathway
+hsa04072	Phospholipase D signaling pathway
+hsa04080	Neuroactive ligand-receptor interaction
+hsa04110	Cell cycle
+hsa04114	Oocyte meiosis
+hsa04115	p53 signaling pathway
+hsa04120	Ubiquitin mediated proteolysis
+hsa04122	Sulfur relay system
+hsa04130	SNARE interactions in vesicular transport
+hsa04136	Autophagy
+hsa04137	Mitophagy
+hsa04140	Autophagy
+hsa04141	Protein processing in endoplasmic reticulum
+hsa04142	Lysosome
+hsa04144	Endocytosis
+hsa04145	Phagosome
+hsa04146	Peroxisome
+hsa04150	mTOR signaling pathway
+hsa04151	PI3K-Akt signaling pathway
+hsa04152	AMPK signaling pathway
+hsa04210	Apoptosis
+hsa04211	Longevity regulating pathway
+hsa04213	Longevity regulating pathway
+hsa04215	Apoptosis
+hsa04216	Ferroptosis
+hsa04217	Necroptosis
+hsa04218	Cellular senescence
+hsa04260	Cardiac muscle contraction
+hsa04261	Adrenergic signaling in cardiomyocytes
+hsa04270	Vascular smooth muscle contraction
+hsa04310	Wnt signaling pathway
+hsa04330	Notch signaling pathway
+hsa04340	Hedgehog signaling pathway
+hsa04350	TGF-beta signaling pathway
+hsa04360	Axon guidance
+hsa04370	VEGF signaling pathway
+hsa04371	Apelin signaling pathway
+hsa04380	Osteoclast differentiation
+hsa04390	Hippo signaling pathway
+hsa04392	Hippo signaling pathway
+hsa04510	Focal adhesion
+hsa04512	ECM-receptor interaction
+hsa04514	Cell adhesion molecules (CAMs)
+hsa04520	Adherens junction
+hsa04530	Tight junction
+hsa04540	Gap junction
+hsa04550	Signaling pathways regulating pluripotency of stem cells
+hsa04610	Complement and coagulation cascades
+hsa04611	Platelet activation
+hsa04612	Antigen processing and presentation
+hsa04614	Renin-angiotensin system
+hsa04620	Toll-like receptor signaling pathway
+hsa04621	NOD-like receptor signaling pathway
+hsa04622	RIG-I-like receptor signaling pathway
+hsa04623	Cytosolic DNA-sensing pathway
+hsa04625	C-type lectin receptor signaling pathway
+hsa04630	Jak-STAT signaling pathway
+hsa04640	Hematopoietic cell lineage
+hsa04650	Natural killer cell mediated cytotoxicity
+hsa04657	IL-17 signaling pathway
+hsa04658	Th1 and Th2 cell differentiation
+hsa04659	Th17 cell differentiation
+hsa04660	T cell receptor signaling pathway
+hsa04662	B cell receptor signaling pathway
+hsa04664	Fc epsilon RI signaling pathway
+hsa04666	Fc gamma R-mediated phagocytosis
+hsa04668	TNF signaling pathway
+hsa04670	Leukocyte transendothelial migration
+hsa04672	Intestinal immune network for IgA production
+hsa04710	Circadian rhythm
+hsa04713	Circadian entrainment
+hsa04714	Thermogenesis
+hsa04720	Long-term potentiation
+hsa04721	Synaptic vesicle cycle
+hsa04722	Neurotrophin signaling pathway
+hsa04723	Retrograde endocannabinoid signaling
+hsa04724	Glutamatergic synapse
+hsa04725	Cholinergic synapse
+hsa04726	Serotonergic synapse
+hsa04727	GABAergic synapse
+hsa04728	Dopaminergic synapse
+hsa04730	Long-term depression
+hsa04740	Olfactory transduction
+hsa04742	Taste transduction
+hsa04744	Phototransduction
+hsa04750	Inflammatory mediator regulation of TRP channels
+hsa04810	Regulation of actin cytoskeleton
+hsa04910	Insulin signaling pathway
+hsa04911	Insulin secretion
+hsa04912	GnRH signaling pathway
+hsa04913	Ovarian steroidogenesis
+hsa04914	Progesterone-mediated oocyte maturation
+hsa04915	Estrogen signaling pathway
+hsa04916	Melanogenesis
+hsa04917	Prolactin signaling pathway
+hsa04918	Thyroid hormone synthesis
+hsa04919	Thyroid hormone signaling pathway
+hsa04920	Adipocytokine signaling pathway
+hsa04921	Oxytocin signaling pathway
+hsa04922	Glucagon signaling pathway
+hsa04923	Regulation of lipolysis in adipocytes
+hsa04924	Renin secretion
+hsa04925	Aldosterone synthesis and secretion
+hsa04926	Relaxin signaling pathway
+hsa04927	Cortisol synthesis and secretion
+hsa04928	Parathyroid hormone synthesis, secretion and action
+hsa04930	Type II diabetes mellitus
+hsa04931	Insulin resistance
+hsa04932	Non-alcoholic fatty liver disease (NAFLD)
+hsa04933	AGE-RAGE signaling pathway in diabetic complications
+hsa04934	Cushing's syndrome
+hsa04940	Type I diabetes mellitus
+hsa04950	Maturity onset diabetes of the young
+hsa04960	Aldosterone-regulated sodium reabsorption
+hsa04961	Endocrine and other factor-regulated calcium reabsorption
+hsa04962	Vasopressin-regulated water reabsorption
+hsa04964	Proximal tubule bicarbonate reclamation
+hsa04966	Collecting duct acid secretion
+hsa04970	Salivary secretion
+hsa04971	Gastric acid secretion
+hsa04972	Pancreatic secretion
+hsa04973	Carbohydrate digestion and absorption
+hsa04974	Protein digestion and absorption
+hsa04975	Fat digestion and absorption
+hsa04976	Bile secretion
+hsa04977	Vitamin digestion and absorption
+hsa04978	Mineral absorption
+hsa04979	Cholesterol metabolism
+hsa05010	Alzheimer's disease
+hsa05012	Parkinson's disease
+hsa05014	Amyotrophic lateral sclerosis (ALS)
+hsa05016	Huntington's disease
+hsa05020	Prion diseases
+hsa05030	Cocaine addiction
+hsa05031	Amphetamine addiction
+hsa05032	Morphine addiction
+hsa05033	Nicotine addiction
+hsa05034	Alcoholism
+hsa05100	Bacterial invasion of epithelial cells
+hsa05110	Vibrio cholerae infection
+hsa05120	Epithelial cell signaling in Helicobacter pylori infection
+hsa05130	Pathogenic Escherichia coli infection
+hsa05131	Shigellosis
+hsa05132	Salmonella infection
+hsa05133	Pertussis
+hsa05134	Legionellosis
+hsa05140	Leishmaniasis
+hsa05142	Chagas disease (American trypanosomiasis)
+hsa05143	African trypanosomiasis
+hsa05144	Malaria
+hsa05145	Toxoplasmosis
+hsa05146	Amoebiasis
+hsa05150	Staphylococcus aureus infection
+hsa05152	Tuberculosis
+hsa05160	Hepatitis C
+hsa05161	Hepatitis B
+hsa05162	Measles
+hsa05163	Human cytomegalovirus infection
+hsa05164	Influenza A
+hsa05165	Human papillomavirus infection
+hsa05166	HTLV-I infection
+hsa05167	Kaposi's sarcoma-associated herpesvirus infection
+hsa05168	Herpes simplex infection
+hsa05169	Epstein-Barr virus infection
+hsa05200	Pathways in cancer
+hsa05202	Transcriptional misregulation in cancer
+hsa05203	Viral carcinogenesis
+hsa05204	Chemical carcinogenesis
+hsa05205	Proteoglycans in cancer
+hsa05206	MicroRNAs in cancer
+hsa05210	Colorectal cancer
+hsa05211	Renal cell carcinoma
+hsa05212	Pancreatic cancer
+hsa05213	Endometrial cancer
+hsa05214	Glioma
+hsa05215	Prostate cancer
+hsa05216	Thyroid cancer
+hsa05217	Basal cell carcinoma
+hsa05218	Melanoma
+hsa05219	Bladder cancer
+hsa05220	Chronic myeloid leukemia
+hsa05221	Acute myeloid leukemia
+hsa05222	Small cell lung cancer
+hsa05223	Non-small cell lung cancer
+hsa05224	Breast cancer
+hsa05225	Hepatocellular carcinoma
+hsa05226	Gastric cancer
+hsa05230	Central carbon metabolism in cancer
+hsa05231	Choline metabolism in cancer
+hsa05310	Asthma
+hsa05320	Autoimmune thyroid disease
+hsa05321	Inflammatory bowel disease (IBD)
+hsa05322	Systemic lupus erythematosus
+hsa05323	Rheumatoid arthritis
+hsa05330	Allograft rejection
+hsa05332	Graft-versus-host disease
+hsa05340	Primary immunodeficiency
+hsa05410	Hypertrophic cardiomyopathy (HCM)
+hsa05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+hsa05414	Dilated cardiomyopathy (DCM)
+hsa05416	Viral myocarditis
+hsa05418	Fluid shear stress and atherosclerosis
--- a/hsa_pathways.tsv.sample	Fri Aug 24 08:29:55 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,330 +0,0 @@
-#value	name
-hsa00010	Glycolysis / Gluconeogenesis
-hsa00020	Citrate cycle (TCA cycle)
-hsa00030	Pentose phosphate pathway
-hsa00040	Pentose and glucuronate interconversions
-hsa00051	Fructose and mannose metabolism
-hsa00052	Galactose metabolism
-hsa00053	Ascorbate and aldarate metabolism
-hsa00061	Fatty acid biosynthesis
-hsa00062	Fatty acid elongation
-hsa00071	Fatty acid degradation
-hsa00072	Synthesis and degradation of ketone bodies
-hsa00100	Steroid biosynthesis
-hsa00120	Primary bile acid biosynthesis
-hsa00130	Ubiquinone and other terpenoid-quinone biosynthesis
-hsa00140	Steroid hormone biosynthesis
-hsa00190	Oxidative phosphorylation
-hsa00220	Arginine biosynthesis
-hsa00230	Purine metabolism
-hsa00232	Caffeine metabolism
-hsa00240	Pyrimidine metabolism
-hsa00250	Alanine, aspartate and glutamate metabolism
-hsa00260	Glycine, serine and threonine metabolism
-hsa00270	Cysteine and methionine metabolism
-hsa00280	Valine, leucine and isoleucine degradation
-hsa00290	Valine, leucine and isoleucine biosynthesis
-hsa00310	Lysine degradation
-hsa00330	Arginine and proline metabolism
-hsa00340	Histidine metabolism
-hsa00350	Tyrosine metabolism
-hsa00360	Phenylalanine metabolism
-hsa00380	Tryptophan metabolism
-hsa00400	Phenylalanine, tyrosine and tryptophan biosynthesis
-hsa00410	beta-Alanine metabolism
-hsa00430	Taurine and hypotaurine metabolism
-hsa00440	Phosphonate and phosphinate metabolism
-hsa00450	Selenocompound metabolism
-hsa00471	D-Glutamine and D-glutamate metabolism
-hsa00472	D-Arginine and D-ornithine metabolism
-hsa00480	Glutathione metabolism
-hsa00500	Starch and sucrose metabolism
-hsa00510	N-Glycan biosynthesis
-hsa00511	Other glycan degradation
-hsa00512	Mucin type O-glycan biosynthesis
-hsa00514	Other types of O-glycan biosynthesis
-hsa00515	Mannose type O-glycan biosynthesis
-hsa00520	Amino sugar and nucleotide sugar metabolism
-hsa00524	Neomycin, kanamycin and gentamicin biosynthesis
-hsa00531	Glycosaminoglycan degradation
-hsa00532	Glycosaminoglycan biosynthesis
-hsa00533	Glycosaminoglycan biosynthesis
-hsa00534	Glycosaminoglycan biosynthesis
-hsa00561	Glycerolipid metabolism
-hsa00562	Inositol phosphate metabolism
-hsa00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
-hsa00564	Glycerophospholipid metabolism
-hsa00565	Ether lipid metabolism
-hsa00590	Arachidonic acid metabolism
-hsa00591	Linoleic acid metabolism
-hsa00592	alpha-Linolenic acid metabolism
-hsa00600	Sphingolipid metabolism
-hsa00601	Glycosphingolipid biosynthesis
-hsa00603	Glycosphingolipid biosynthesis
-hsa00604	Glycosphingolipid biosynthesis
-hsa00620	Pyruvate metabolism
-hsa00630	Glyoxylate and dicarboxylate metabolism
-hsa00640	Propanoate metabolism
-hsa00650	Butanoate metabolism
-hsa00670	One carbon pool by folate
-hsa00730	Thiamine metabolism
-hsa00740	Riboflavin metabolism
-hsa00750	Vitamin B6 metabolism
-hsa00760	Nicotinate and nicotinamide metabolism
-hsa00770	Pantothenate and CoA biosynthesis
-hsa00780	Biotin metabolism
-hsa00785	Lipoic acid metabolism
-hsa00790	Folate biosynthesis
-hsa00830	Retinol metabolism
-hsa00860	Porphyrin and chlorophyll metabolism
-hsa00900	Terpenoid backbone biosynthesis
-hsa00910	Nitrogen metabolism
-hsa00920	Sulfur metabolism
-hsa00970	Aminoacyl-tRNA biosynthesis
-hsa00980	Metabolism of xenobiotics by cytochrome P450
-hsa00982	Drug metabolism
-hsa00983	Drug metabolism
-hsa01040	Biosynthesis of unsaturated fatty acids
-hsa01100	Metabolic pathways
-hsa01200	Carbon metabolism
-hsa01210	2-Oxocarboxylic acid metabolism
-hsa01212	Fatty acid metabolism
-hsa01230	Biosynthesis of amino acids
-hsa01521	EGFR tyrosine kinase inhibitor resistance
-hsa01522	Endocrine resistance
-hsa01523	Antifolate resistance
-hsa01524	Platinum drug resistance
-hsa02010	ABC transporters
-hsa03008	Ribosome biogenesis in eukaryotes
-hsa03010	Ribosome
-hsa03013	RNA transport
-hsa03015	mRNA surveillance pathway
-hsa03018	RNA degradation
-hsa03020	RNA polymerase
-hsa03022	Basal transcription factors
-hsa03030	DNA replication
-hsa03040	Spliceosome
-hsa03050	Proteasome
-hsa03060	Protein export
-hsa03320	PPAR signaling pathway
-hsa03410	Base excision repair
-hsa03420	Nucleotide excision repair
-hsa03430	Mismatch repair
-hsa03440	Homologous recombination
-hsa03450	Non-homologous end-joining
-hsa03460	Fanconi anemia pathway
-hsa04010	MAPK signaling pathway
-hsa04012	ErbB signaling pathway
-hsa04014	Ras signaling pathway
-hsa04015	Rap1 signaling pathway
-hsa04020	Calcium signaling pathway
-hsa04022	cGMP-PKG signaling pathway
-hsa04024	cAMP signaling pathway
-hsa04060	Cytokine-cytokine receptor interaction
-hsa04062	Chemokine signaling pathway
-hsa04064	NF-kappa B signaling pathway
-hsa04066	HIF-1 signaling pathway
-hsa04068	FoxO signaling pathway
-hsa04070	Phosphatidylinositol signaling system
-hsa04071	Sphingolipid signaling pathway
-hsa04072	Phospholipase D signaling pathway
-hsa04080	Neuroactive ligand-receptor interaction
-hsa04110	Cell cycle
-hsa04114	Oocyte meiosis
-hsa04115	p53 signaling pathway
-hsa04120	Ubiquitin mediated proteolysis
-hsa04122	Sulfur relay system
-hsa04130	SNARE interactions in vesicular transport
-hsa04136	Autophagy
-hsa04137	Mitophagy
-hsa04140	Autophagy
-hsa04141	Protein processing in endoplasmic reticulum
-hsa04142	Lysosome
-hsa04144	Endocytosis
-hsa04145	Phagosome
-hsa04146	Peroxisome
-hsa04150	mTOR signaling pathway
-hsa04151	PI3K-Akt signaling pathway
-hsa04152	AMPK signaling pathway
-hsa04210	Apoptosis
-hsa04211	Longevity regulating pathway
-hsa04213	Longevity regulating pathway
-hsa04215	Apoptosis
-hsa04216	Ferroptosis
-hsa04217	Necroptosis
-hsa04218	Cellular senescence
-hsa04260	Cardiac muscle contraction
-hsa04261	Adrenergic signaling in cardiomyocytes
-hsa04270	Vascular smooth muscle contraction
-hsa04310	Wnt signaling pathway
-hsa04330	Notch signaling pathway
-hsa04340	Hedgehog signaling pathway
-hsa04350	TGF-beta signaling pathway
-hsa04360	Axon guidance
-hsa04370	VEGF signaling pathway
-hsa04371	Apelin signaling pathway
-hsa04380	Osteoclast differentiation
-hsa04390	Hippo signaling pathway
-hsa04392	Hippo signaling pathway
-hsa04510	Focal adhesion
-hsa04512	ECM-receptor interaction
-hsa04514	Cell adhesion molecules (CAMs)
-hsa04520	Adherens junction
-hsa04530	Tight junction
-hsa04540	Gap junction
-hsa04550	Signaling pathways regulating pluripotency of stem cells
-hsa04610	Complement and coagulation cascades
-hsa04611	Platelet activation
-hsa04612	Antigen processing and presentation
-hsa04614	Renin-angiotensin system
-hsa04620	Toll-like receptor signaling pathway
-hsa04621	NOD-like receptor signaling pathway
-hsa04622	RIG-I-like receptor signaling pathway
-hsa04623	Cytosolic DNA-sensing pathway
-hsa04625	C-type lectin receptor signaling pathway
-hsa04630	Jak-STAT signaling pathway
-hsa04640	Hematopoietic cell lineage
-hsa04650	Natural killer cell mediated cytotoxicity
-hsa04657	IL-17 signaling pathway
-hsa04658	Th1 and Th2 cell differentiation
-hsa04659	Th17 cell differentiation
-hsa04660	T cell receptor signaling pathway
-hsa04662	B cell receptor signaling pathway
-hsa04664	Fc epsilon RI signaling pathway
-hsa04666	Fc gamma R-mediated phagocytosis
-hsa04668	TNF signaling pathway
-hsa04670	Leukocyte transendothelial migration
-hsa04672	Intestinal immune network for IgA production
-hsa04710	Circadian rhythm
-hsa04713	Circadian entrainment
-hsa04714	Thermogenesis
-hsa04720	Long-term potentiation
-hsa04721	Synaptic vesicle cycle
-hsa04722	Neurotrophin signaling pathway
-hsa04723	Retrograde endocannabinoid signaling
-hsa04724	Glutamatergic synapse
-hsa04725	Cholinergic synapse
-hsa04726	Serotonergic synapse
-hsa04727	GABAergic synapse
-hsa04728	Dopaminergic synapse
-hsa04730	Long-term depression
-hsa04740	Olfactory transduction
-hsa04742	Taste transduction
-hsa04744	Phototransduction
-hsa04750	Inflammatory mediator regulation of TRP channels
-hsa04810	Regulation of actin cytoskeleton
-hsa04910	Insulin signaling pathway
-hsa04911	Insulin secretion
-hsa04912	GnRH signaling pathway
-hsa04913	Ovarian steroidogenesis
-hsa04914	Progesterone-mediated oocyte maturation
-hsa04915	Estrogen signaling pathway
-hsa04916	Melanogenesis
-hsa04917	Prolactin signaling pathway
-hsa04918	Thyroid hormone synthesis
-hsa04919	Thyroid hormone signaling pathway
-hsa04920	Adipocytokine signaling pathway
-hsa04921	Oxytocin signaling pathway
-hsa04922	Glucagon signaling pathway
-hsa04923	Regulation of lipolysis in adipocytes
-hsa04924	Renin secretion
-hsa04925	Aldosterone synthesis and secretion
-hsa04926	Relaxin signaling pathway
-hsa04927	Cortisol synthesis and secretion
-hsa04928	Parathyroid hormone synthesis, secretion and action
-hsa04930	Type II diabetes mellitus
-hsa04931	Insulin resistance
-hsa04932	Non-alcoholic fatty liver disease (NAFLD)
-hsa04933	AGE-RAGE signaling pathway in diabetic complications
-hsa04934	Cushing's syndrome
-hsa04940	Type I diabetes mellitus
-hsa04950	Maturity onset diabetes of the young
-hsa04960	Aldosterone-regulated sodium reabsorption
-hsa04961	Endocrine and other factor-regulated calcium reabsorption
-hsa04962	Vasopressin-regulated water reabsorption
-hsa04964	Proximal tubule bicarbonate reclamation
-hsa04966	Collecting duct acid secretion
-hsa04970	Salivary secretion
-hsa04971	Gastric acid secretion
-hsa04972	Pancreatic secretion
-hsa04973	Carbohydrate digestion and absorption
-hsa04974	Protein digestion and absorption
-hsa04975	Fat digestion and absorption
-hsa04976	Bile secretion
-hsa04977	Vitamin digestion and absorption
-hsa04978	Mineral absorption
-hsa04979	Cholesterol metabolism
-hsa05010	Alzheimer's disease
-hsa05012	Parkinson's disease
-hsa05014	Amyotrophic lateral sclerosis (ALS)
-hsa05016	Huntington's disease
-hsa05020	Prion diseases
-hsa05030	Cocaine addiction
-hsa05031	Amphetamine addiction
-hsa05032	Morphine addiction
-hsa05033	Nicotine addiction
-hsa05034	Alcoholism
-hsa05100	Bacterial invasion of epithelial cells
-hsa05110	Vibrio cholerae infection
-hsa05120	Epithelial cell signaling in Helicobacter pylori infection
-hsa05130	Pathogenic Escherichia coli infection
-hsa05131	Shigellosis
-hsa05132	Salmonella infection
-hsa05133	Pertussis
-hsa05134	Legionellosis
-hsa05140	Leishmaniasis
-hsa05142	Chagas disease (American trypanosomiasis)
-hsa05143	African trypanosomiasis
-hsa05144	Malaria
-hsa05145	Toxoplasmosis
-hsa05146	Amoebiasis
-hsa05150	Staphylococcus aureus infection
-hsa05152	Tuberculosis
-hsa05160	Hepatitis C
-hsa05161	Hepatitis B
-hsa05162	Measles
-hsa05163	Human cytomegalovirus infection
-hsa05164	Influenza A
-hsa05165	Human papillomavirus infection
-hsa05166	HTLV-I infection
-hsa05167	Kaposi's sarcoma-associated herpesvirus infection
-hsa05168	Herpes simplex infection
-hsa05169	Epstein-Barr virus infection
-hsa05200	Pathways in cancer
-hsa05202	Transcriptional misregulation in cancer
-hsa05203	Viral carcinogenesis
-hsa05204	Chemical carcinogenesis
-hsa05205	Proteoglycans in cancer
-hsa05206	MicroRNAs in cancer
-hsa05210	Colorectal cancer
-hsa05211	Renal cell carcinoma
-hsa05212	Pancreatic cancer
-hsa05213	Endometrial cancer
-hsa05214	Glioma
-hsa05215	Prostate cancer
-hsa05216	Thyroid cancer
-hsa05217	Basal cell carcinoma
-hsa05218	Melanoma
-hsa05219	Bladder cancer
-hsa05220	Chronic myeloid leukemia
-hsa05221	Acute myeloid leukemia
-hsa05222	Small cell lung cancer
-hsa05223	Non-small cell lung cancer
-hsa05224	Breast cancer
-hsa05225	Hepatocellular carcinoma
-hsa05226	Gastric cancer
-hsa05230	Central carbon metabolism in cancer
-hsa05231	Choline metabolism in cancer
-hsa05310	Asthma
-hsa05320	Autoimmune thyroid disease
-hsa05321	Inflammatory bowel disease (IBD)
-hsa05322	Systemic lupus erythematosus
-hsa05323	Rheumatoid arthritis
-hsa05330	Allograft rejection
-hsa05332	Graft-versus-host disease
-hsa05340	Primary immunodeficiency
-hsa05410	Hypertrophic cardiomyopathy (HCM)
-hsa05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
-hsa05414	Dilated cardiomyopathy (DCM)
-hsa05416	Viral myocarditis
-hsa05418	Fluid shear stress and atherosclerosis
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mmu_pathways.loc.sample	Fri Aug 24 08:32:17 2018 -0400
@@ -0,0 +1,326 @@
+#value	name
+mmu00010	Glycolysis / Gluconeogenesis
+mmu00020	Citrate cycle (TCA cycle)
+mmu00030	Pentose phosphate pathway
+mmu00040	Pentose and glucuronate interconversions
+mmu00051	Fructose and mannose metabolism
+mmu00052	Galactose metabolism
+mmu00053	Ascorbate and aldarate metabolism
+mmu00061	Fatty acid biosynthesis
+mmu00062	Fatty acid elongation
+mmu00071	Fatty acid degradation
+mmu00072	Synthesis and degradation of ketone bodies
+mmu00100	Steroid biosynthesis
+mmu00120	Primary bile acid biosynthesis
+mmu00130	Ubiquinone and other terpenoid-quinone biosynthesis
+mmu00140	Steroid hormone biosynthesis
+mmu00190	Oxidative phosphorylation
+mmu00220	Arginine biosynthesis
+mmu00230	Purine metabolism
+mmu00232	Caffeine metabolism
+mmu00240	Pyrimidine metabolism
+mmu00250	Alanine, aspartate and glutamate metabolism
+mmu00260	Glycine, serine and threonine metabolism
+mmu00270	Cysteine and methionine metabolism
+mmu00280	Valine, leucine and isoleucine degradation
+mmu00290	Valine, leucine and isoleucine biosynthesis
+mmu00310	Lysine degradation
+mmu00330	Arginine and proline metabolism
+mmu00340	Histidine metabolism
+mmu00350	Tyrosine metabolism
+mmu00360	Phenylalanine metabolism
+mmu00380	Tryptophan metabolism
+mmu00400	Phenylalanine, tyrosine and tryptophan biosynthesis
+mmu00410	beta-Alanine metabolism
+mmu00430	Taurine and hypotaurine metabolism
+mmu00440	Phosphonate and phosphinate metabolism
+mmu00450	Selenocompound metabolism
+mmu00471	D-Glutamine and D-glutamate metabolism
+mmu00472	D-Arginine and D-ornithine metabolism
+mmu00480	Glutathione metabolism
+mmu00500	Starch and sucrose metabolism
+mmu00510	N-Glycan biosynthesis
+mmu00511	Other glycan degradation
+mmu00512	Mucin type O-glycan biosynthesis
+mmu00514	Other types of O-glycan biosynthesis
+mmu00515	Mannose type O-glycan biosynthesis
+mmu00520	Amino sugar and nucleotide sugar metabolism
+mmu00524	Neomycin, kanamycin and gentamicin biosynthesis
+mmu00531	Glycosaminoglycan degradation
+mmu00532	Glycosaminoglycan biosynthesis
+mmu00533	Glycosaminoglycan biosynthesis
+mmu00534	Glycosaminoglycan biosynthesis
+mmu00561	Glycerolipid metabolism
+mmu00562	Inositol phosphate metabolism
+mmu00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+mmu00564	Glycerophospholipid metabolism
+mmu00565	Ether lipid metabolism
+mmu00590	Arachidonic acid metabolism
+mmu00591	Linoleic acid metabolism
+mmu00592	alpha-Linolenic acid metabolism
+mmu00600	Sphingolipid metabolism
+mmu00601	Glycosphingolipid biosynthesis
+mmu00603	Glycosphingolipid biosynthesis
+mmu00604	Glycosphingolipid biosynthesis
+mmu00620	Pyruvate metabolism
+mmu00630	Glyoxylate and dicarboxylate metabolism
+mmu00640	Propanoate metabolism
+mmu00650	Butanoate metabolism
+mmu00670	One carbon pool by folate
+mmu00730	Thiamine metabolism
+mmu00740	Riboflavin metabolism
+mmu00750	Vitamin B6 metabolism
+mmu00760	Nicotinate and nicotinamide metabolism
+mmu00770	Pantothenate and CoA biosynthesis
+mmu00780	Biotin metabolism
+mmu00785	Lipoic acid metabolism
+mmu00790	Folate biosynthesis
+mmu00830	Retinol metabolism
+mmu00860	Porphyrin and chlorophyll metabolism
+mmu00900	Terpenoid backbone biosynthesis
+mmu00910	Nitrogen metabolism
+mmu00920	Sulfur metabolism
+mmu00970	Aminoacyl-tRNA biosynthesis
+mmu00980	Metabolism of xenobiotics by cytochrome P450
+mmu00982	Drug metabolism
+mmu00983	Drug metabolism
+mmu01040	Biosynthesis of unsaturated fatty acids
+mmu01100	Metabolic pathways
+mmu01200	Carbon metabolism
+mmu01210	2-Oxocarboxylic acid metabolism
+mmu01212	Fatty acid metabolism
+mmu01230	Biosynthesis of amino acids
+mmu01521	EGFR tyrosine kinase inhibitor resistance
+mmu01522	Endocrine resistance
+mmu01523	Antifolate resistance
+mmu01524	Platinum drug resistance
+mmu02010	ABC transporters
+mmu03008	Ribosome biogenesis in eukaryotes
+mmu03010	Ribosome
+mmu03013	RNA transport
+mmu03015	mRNA surveillance pathway
+mmu03018	RNA degradation
+mmu03020	RNA polymerase
+mmu03022	Basal transcription factors
+mmu03030	DNA replication
+mmu03040	Spliceosome
+mmu03050	Proteasome
+mmu03060	Protein export
+mmu03320	PPAR signaling pathway
+mmu03410	Base excision repair
+mmu03420	Nucleotide excision repair
+mmu03430	Mismatch repair
+mmu03440	Homologous recombination
+mmu03450	Non-homologous end-joining
+mmu03460	Fanconi anemia pathway
+mmu04010	MAPK signaling pathway
+mmu04012	ErbB signaling pathway
+mmu04014	Ras signaling pathway
+mmu04015	Rap1 signaling pathway
+mmu04020	Calcium signaling pathway
+mmu04022	cGMP-PKG signaling pathway
+mmu04024	cAMP signaling pathway
+mmu04060	Cytokine-cytokine receptor interaction
+mmu04062	Chemokine signaling pathway
+mmu04064	NF-kappa B signaling pathway
+mmu04066	HIF-1 signaling pathway
+mmu04068	FoxO signaling pathway
+mmu04070	Phosphatidylinositol signaling system
+mmu04071	Sphingolipid signaling pathway
+mmu04072	Phospholipase D signaling pathway
+mmu04080	Neuroactive ligand-receptor interaction
+mmu04110	Cell cycle
+mmu04114	Oocyte meiosis
+mmu04115	p53 signaling pathway
+mmu04120	Ubiquitin mediated proteolysis
+mmu04122	Sulfur relay system
+mmu04130	SNARE interactions in vesicular transport
+mmu04136	Autophagy
+mmu04137	Mitophagy
+mmu04140	Autophagy
+mmu04141	Protein processing in endoplasmic reticulum
+mmu04142	Lysosome
+mmu04144	Endocytosis
+mmu04145	Phagosome
+mmu04146	Peroxisome
+mmu04150	mTOR signaling pathway
+mmu04151	PI3K-Akt signaling pathway
+mmu04152	AMPK signaling pathway
+mmu04210	Apoptosis
+mmu04211	Longevity regulating pathway
+mmu04213	Longevity regulating pathway
+mmu04215	Apoptosis
+mmu04216	Ferroptosis
+mmu04217	Necroptosis
+mmu04218	Cellular senescence
+mmu04260	Cardiac muscle contraction
+mmu04261	Adrenergic signaling in cardiomyocytes
+mmu04270	Vascular smooth muscle contraction
+mmu04310	Wnt signaling pathway
+mmu04330	Notch signaling pathway
+mmu04340	Hedgehog signaling pathway
+mmu04350	TGF-beta signaling pathway
+mmu04360	Axon guidance
+mmu04370	VEGF signaling pathway
+mmu04371	Apelin signaling pathway
+mmu04380	Osteoclast differentiation
+mmu04390	Hippo signaling pathway
+mmu04392	Hippo signaling pathway
+mmu04510	Focal adhesion
+mmu04512	ECM-receptor interaction
+mmu04514	Cell adhesion molecules (CAMs)
+mmu04520	Adherens junction
+mmu04530	Tight junction
+mmu04540	Gap junction
+mmu04550	Signaling pathways regulating pluripotency of stem cells
+mmu04610	Complement and coagulation cascades
+mmu04611	Platelet activation
+mmu04612	Antigen processing and presentation
+mmu04614	Renin-angiotensin system
+mmu04620	Toll-like receptor signaling pathway
+mmu04621	NOD-like receptor signaling pathway
+mmu04622	RIG-I-like receptor signaling pathway
+mmu04623	Cytosolic DNA-sensing pathway
+mmu04625	C-type lectin receptor signaling pathway
+mmu04630	Jak-STAT signaling pathway
+mmu04640	Hematopoietic cell lineage
+mmu04650	Natural killer cell mediated cytotoxicity
+mmu04657	IL-17 signaling pathway
+mmu04658	Th1 and Th2 cell differentiation
+mmu04659	Th17 cell differentiation
+mmu04660	T cell receptor signaling pathway
+mmu04662	B cell receptor signaling pathway
+mmu04664	Fc epsilon RI signaling pathway
+mmu04666	Fc gamma R-mediated phagocytosis
+mmu04668	TNF signaling pathway
+mmu04670	Leukocyte transendothelial migration
+mmu04672	Intestinal immune network for IgA production
+mmu04710	Circadian rhythm
+mmu04713	Circadian entrainment
+mmu04714	Thermogenesis
+mmu04720	Long-term potentiation
+mmu04721	Synaptic vesicle cycle
+mmu04722	Neurotrophin signaling pathway
+mmu04723	Retrograde endocannabinoid signaling
+mmu04724	Glutamatergic synapse
+mmu04725	Cholinergic synapse
+mmu04726	Serotonergic synapse
+mmu04727	GABAergic synapse
+mmu04728	Dopaminergic synapse
+mmu04730	Long-term depression
+mmu04740	Olfactory transduction
+mmu04742	Taste transduction
+mmu04744	Phototransduction
+mmu04750	Inflammatory mediator regulation of TRP channels
+mmu04810	Regulation of actin cytoskeleton
+mmu04910	Insulin signaling pathway
+mmu04911	Insulin secretion
+mmu04912	GnRH signaling pathway
+mmu04913	Ovarian steroidogenesis
+mmu04914	Progesterone-mediated oocyte maturation
+mmu04915	Estrogen signaling pathway
+mmu04916	Melanogenesis
+mmu04917	Prolactin signaling pathway
+mmu04918	Thyroid hormone synthesis
+mmu04919	Thyroid hormone signaling pathway
+mmu04920	Adipocytokine signaling pathway
+mmu04921	Oxytocin signaling pathway
+mmu04922	Glucagon signaling pathway
+mmu04923	Regulation of lipolysis in adipocytes
+mmu04924	Renin secretion
+mmu04925	Aldosterone synthesis and secretion
+mmu04926	Relaxin signaling pathway
+mmu04927	Cortisol synthesis and secretion
+mmu04928	Parathyroid hormone synthesis, secretion and action
+mmu04930	Type II diabetes mellitus
+mmu04931	Insulin resistance
+mmu04932	Non-alcoholic fatty liver disease (NAFLD)
+mmu04933	AGE-RAGE signaling pathway in diabetic complications
+mmu04934	Cushing's syndrome
+mmu04940	Type I diabetes mellitus
+mmu04950	Maturity onset diabetes of the young
+mmu04960	Aldosterone-regulated sodium reabsorption
+mmu04961	Endocrine and other factor-regulated calcium reabsorption
+mmu04962	Vasopressin-regulated water reabsorption
+mmu04964	Proximal tubule bicarbonate reclamation
+mmu04966	Collecting duct acid secretion
+mmu04970	Salivary secretion
+mmu04971	Gastric acid secretion
+mmu04972	Pancreatic secretion
+mmu04973	Carbohydrate digestion and absorption
+mmu04974	Protein digestion and absorption
+mmu04975	Fat digestion and absorption
+mmu04976	Bile secretion
+mmu04977	Vitamin digestion and absorption
+mmu04978	Mineral absorption
+mmu04979	Cholesterol metabolism
+mmu05010	Alzheimer's disease
+mmu05012	Parkinson's disease
+mmu05014	Amyotrophic lateral sclerosis (ALS)
+mmu05016	Huntington's disease
+mmu05020	Prion diseases
+mmu05030	Cocaine addiction
+mmu05031	Amphetamine addiction
+mmu05032	Morphine addiction
+mmu05033	Nicotine addiction
+mmu05034	Alcoholism
+mmu05100	Bacterial invasion of epithelial cells
+mmu05132	Salmonella infection
+mmu05133	Pertussis
+mmu05134	Legionellosis
+mmu05140	Leishmaniasis
+mmu05142	Chagas disease (American trypanosomiasis)
+mmu05143	African trypanosomiasis
+mmu05144	Malaria
+mmu05145	Toxoplasmosis
+mmu05146	Amoebiasis
+mmu05150	Staphylococcus aureus infection
+mmu05152	Tuberculosis
+mmu05160	Hepatitis C
+mmu05161	Hepatitis B
+mmu05162	Measles
+mmu05163	Human cytomegalovirus infection
+mmu05164	Influenza A
+mmu05165	Human papillomavirus infection
+mmu05166	HTLV-I infection
+mmu05167	Kaposi's sarcoma-associated herpesvirus infection
+mmu05168	Herpes simplex infection
+mmu05169	Epstein-Barr virus infection
+mmu05200	Pathways in cancer
+mmu05202	Transcriptional misregulation in cancer
+mmu05203	Viral carcinogenesis
+mmu05204	Chemical carcinogenesis
+mmu05205	Proteoglycans in cancer
+mmu05206	MicroRNAs in cancer
+mmu05210	Colorectal cancer
+mmu05211	Renal cell carcinoma
+mmu05212	Pancreatic cancer
+mmu05213	Endometrial cancer
+mmu05214	Glioma
+mmu05215	Prostate cancer
+mmu05216	Thyroid cancer
+mmu05217	Basal cell carcinoma
+mmu05218	Melanoma
+mmu05219	Bladder cancer
+mmu05220	Chronic myeloid leukemia
+mmu05221	Acute myeloid leukemia
+mmu05222	Small cell lung cancer
+mmu05223	Non-small cell lung cancer
+mmu05224	Breast cancer
+mmu05225	Hepatocellular carcinoma
+mmu05226	Gastric cancer
+mmu05230	Central carbon metabolism in cancer
+mmu05231	Choline metabolism in cancer
+mmu05310	Asthma
+mmu05320	Autoimmune thyroid disease
+mmu05321	Inflammatory bowel disease (IBD)
+mmu05322	Systemic lupus erythematosus
+mmu05323	Rheumatoid arthritis
+mmu05330	Allograft rejection
+mmu05332	Graft-versus-host disease
+mmu05340	Primary immunodeficiency
+mmu05410	Hypertrophic cardiomyopathy (HCM)
+mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+mmu05414	Dilated cardiomyopathy (DCM)
+mmu05416	Viral myocarditis
+mmu05418	Fluid shear stress and atherosclerosis
--- a/mmu_pathways.tsv.sample	Fri Aug 24 08:29:55 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,326 +0,0 @@
-#value	name
-mmu00010	Glycolysis / Gluconeogenesis
-mmu00020	Citrate cycle (TCA cycle)
-mmu00030	Pentose phosphate pathway
-mmu00040	Pentose and glucuronate interconversions
-mmu00051	Fructose and mannose metabolism
-mmu00052	Galactose metabolism
-mmu00053	Ascorbate and aldarate metabolism
-mmu00061	Fatty acid biosynthesis
-mmu00062	Fatty acid elongation
-mmu00071	Fatty acid degradation
-mmu00072	Synthesis and degradation of ketone bodies
-mmu00100	Steroid biosynthesis
-mmu00120	Primary bile acid biosynthesis
-mmu00130	Ubiquinone and other terpenoid-quinone biosynthesis
-mmu00140	Steroid hormone biosynthesis
-mmu00190	Oxidative phosphorylation
-mmu00220	Arginine biosynthesis
-mmu00230	Purine metabolism
-mmu00232	Caffeine metabolism
-mmu00240	Pyrimidine metabolism
-mmu00250	Alanine, aspartate and glutamate metabolism
-mmu00260	Glycine, serine and threonine metabolism
-mmu00270	Cysteine and methionine metabolism
-mmu00280	Valine, leucine and isoleucine degradation
-mmu00290	Valine, leucine and isoleucine biosynthesis
-mmu00310	Lysine degradation
-mmu00330	Arginine and proline metabolism
-mmu00340	Histidine metabolism
-mmu00350	Tyrosine metabolism
-mmu00360	Phenylalanine metabolism
-mmu00380	Tryptophan metabolism
-mmu00400	Phenylalanine, tyrosine and tryptophan biosynthesis
-mmu00410	beta-Alanine metabolism
-mmu00430	Taurine and hypotaurine metabolism
-mmu00440	Phosphonate and phosphinate metabolism
-mmu00450	Selenocompound metabolism
-mmu00471	D-Glutamine and D-glutamate metabolism
-mmu00472	D-Arginine and D-ornithine metabolism
-mmu00480	Glutathione metabolism
-mmu00500	Starch and sucrose metabolism
-mmu00510	N-Glycan biosynthesis
-mmu00511	Other glycan degradation
-mmu00512	Mucin type O-glycan biosynthesis
-mmu00514	Other types of O-glycan biosynthesis
-mmu00515	Mannose type O-glycan biosynthesis
-mmu00520	Amino sugar and nucleotide sugar metabolism
-mmu00524	Neomycin, kanamycin and gentamicin biosynthesis
-mmu00531	Glycosaminoglycan degradation
-mmu00532	Glycosaminoglycan biosynthesis
-mmu00533	Glycosaminoglycan biosynthesis
-mmu00534	Glycosaminoglycan biosynthesis
-mmu00561	Glycerolipid metabolism
-mmu00562	Inositol phosphate metabolism
-mmu00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
-mmu00564	Glycerophospholipid metabolism
-mmu00565	Ether lipid metabolism
-mmu00590	Arachidonic acid metabolism
-mmu00591	Linoleic acid metabolism
-mmu00592	alpha-Linolenic acid metabolism
-mmu00600	Sphingolipid metabolism
-mmu00601	Glycosphingolipid biosynthesis
-mmu00603	Glycosphingolipid biosynthesis
-mmu00604	Glycosphingolipid biosynthesis
-mmu00620	Pyruvate metabolism
-mmu00630	Glyoxylate and dicarboxylate metabolism
-mmu00640	Propanoate metabolism
-mmu00650	Butanoate metabolism
-mmu00670	One carbon pool by folate
-mmu00730	Thiamine metabolism
-mmu00740	Riboflavin metabolism
-mmu00750	Vitamin B6 metabolism
-mmu00760	Nicotinate and nicotinamide metabolism
-mmu00770	Pantothenate and CoA biosynthesis
-mmu00780	Biotin metabolism
-mmu00785	Lipoic acid metabolism
-mmu00790	Folate biosynthesis
-mmu00830	Retinol metabolism
-mmu00860	Porphyrin and chlorophyll metabolism
-mmu00900	Terpenoid backbone biosynthesis
-mmu00910	Nitrogen metabolism
-mmu00920	Sulfur metabolism
-mmu00970	Aminoacyl-tRNA biosynthesis
-mmu00980	Metabolism of xenobiotics by cytochrome P450
-mmu00982	Drug metabolism
-mmu00983	Drug metabolism
-mmu01040	Biosynthesis of unsaturated fatty acids
-mmu01100	Metabolic pathways
-mmu01200	Carbon metabolism
-mmu01210	2-Oxocarboxylic acid metabolism
-mmu01212	Fatty acid metabolism
-mmu01230	Biosynthesis of amino acids
-mmu01521	EGFR tyrosine kinase inhibitor resistance
-mmu01522	Endocrine resistance
-mmu01523	Antifolate resistance
-mmu01524	Platinum drug resistance
-mmu02010	ABC transporters
-mmu03008	Ribosome biogenesis in eukaryotes
-mmu03010	Ribosome
-mmu03013	RNA transport
-mmu03015	mRNA surveillance pathway
-mmu03018	RNA degradation
-mmu03020	RNA polymerase
-mmu03022	Basal transcription factors
-mmu03030	DNA replication
-mmu03040	Spliceosome
-mmu03050	Proteasome
-mmu03060	Protein export
-mmu03320	PPAR signaling pathway
-mmu03410	Base excision repair
-mmu03420	Nucleotide excision repair
-mmu03430	Mismatch repair
-mmu03440	Homologous recombination
-mmu03450	Non-homologous end-joining
-mmu03460	Fanconi anemia pathway
-mmu04010	MAPK signaling pathway
-mmu04012	ErbB signaling pathway
-mmu04014	Ras signaling pathway
-mmu04015	Rap1 signaling pathway
-mmu04020	Calcium signaling pathway
-mmu04022	cGMP-PKG signaling pathway
-mmu04024	cAMP signaling pathway
-mmu04060	Cytokine-cytokine receptor interaction
-mmu04062	Chemokine signaling pathway
-mmu04064	NF-kappa B signaling pathway
-mmu04066	HIF-1 signaling pathway
-mmu04068	FoxO signaling pathway
-mmu04070	Phosphatidylinositol signaling system
-mmu04071	Sphingolipid signaling pathway
-mmu04072	Phospholipase D signaling pathway
-mmu04080	Neuroactive ligand-receptor interaction
-mmu04110	Cell cycle
-mmu04114	Oocyte meiosis
-mmu04115	p53 signaling pathway
-mmu04120	Ubiquitin mediated proteolysis
-mmu04122	Sulfur relay system
-mmu04130	SNARE interactions in vesicular transport
-mmu04136	Autophagy
-mmu04137	Mitophagy
-mmu04140	Autophagy
-mmu04141	Protein processing in endoplasmic reticulum
-mmu04142	Lysosome
-mmu04144	Endocytosis
-mmu04145	Phagosome
-mmu04146	Peroxisome
-mmu04150	mTOR signaling pathway
-mmu04151	PI3K-Akt signaling pathway
-mmu04152	AMPK signaling pathway
-mmu04210	Apoptosis
-mmu04211	Longevity regulating pathway
-mmu04213	Longevity regulating pathway
-mmu04215	Apoptosis
-mmu04216	Ferroptosis
-mmu04217	Necroptosis
-mmu04218	Cellular senescence
-mmu04260	Cardiac muscle contraction
-mmu04261	Adrenergic signaling in cardiomyocytes
-mmu04270	Vascular smooth muscle contraction
-mmu04310	Wnt signaling pathway
-mmu04330	Notch signaling pathway
-mmu04340	Hedgehog signaling pathway
-mmu04350	TGF-beta signaling pathway
-mmu04360	Axon guidance
-mmu04370	VEGF signaling pathway
-mmu04371	Apelin signaling pathway
-mmu04380	Osteoclast differentiation
-mmu04390	Hippo signaling pathway
-mmu04392	Hippo signaling pathway
-mmu04510	Focal adhesion
-mmu04512	ECM-receptor interaction
-mmu04514	Cell adhesion molecules (CAMs)
-mmu04520	Adherens junction
-mmu04530	Tight junction
-mmu04540	Gap junction
-mmu04550	Signaling pathways regulating pluripotency of stem cells
-mmu04610	Complement and coagulation cascades
-mmu04611	Platelet activation
-mmu04612	Antigen processing and presentation
-mmu04614	Renin-angiotensin system
-mmu04620	Toll-like receptor signaling pathway
-mmu04621	NOD-like receptor signaling pathway
-mmu04622	RIG-I-like receptor signaling pathway
-mmu04623	Cytosolic DNA-sensing pathway
-mmu04625	C-type lectin receptor signaling pathway
-mmu04630	Jak-STAT signaling pathway
-mmu04640	Hematopoietic cell lineage
-mmu04650	Natural killer cell mediated cytotoxicity
-mmu04657	IL-17 signaling pathway
-mmu04658	Th1 and Th2 cell differentiation
-mmu04659	Th17 cell differentiation
-mmu04660	T cell receptor signaling pathway
-mmu04662	B cell receptor signaling pathway
-mmu04664	Fc epsilon RI signaling pathway
-mmu04666	Fc gamma R-mediated phagocytosis
-mmu04668	TNF signaling pathway
-mmu04670	Leukocyte transendothelial migration
-mmu04672	Intestinal immune network for IgA production
-mmu04710	Circadian rhythm
-mmu04713	Circadian entrainment
-mmu04714	Thermogenesis
-mmu04720	Long-term potentiation
-mmu04721	Synaptic vesicle cycle
-mmu04722	Neurotrophin signaling pathway
-mmu04723	Retrograde endocannabinoid signaling
-mmu04724	Glutamatergic synapse
-mmu04725	Cholinergic synapse
-mmu04726	Serotonergic synapse
-mmu04727	GABAergic synapse
-mmu04728	Dopaminergic synapse
-mmu04730	Long-term depression
-mmu04740	Olfactory transduction
-mmu04742	Taste transduction
-mmu04744	Phototransduction
-mmu04750	Inflammatory mediator regulation of TRP channels
-mmu04810	Regulation of actin cytoskeleton
-mmu04910	Insulin signaling pathway
-mmu04911	Insulin secretion
-mmu04912	GnRH signaling pathway
-mmu04913	Ovarian steroidogenesis
-mmu04914	Progesterone-mediated oocyte maturation
-mmu04915	Estrogen signaling pathway
-mmu04916	Melanogenesis
-mmu04917	Prolactin signaling pathway
-mmu04918	Thyroid hormone synthesis
-mmu04919	Thyroid hormone signaling pathway
-mmu04920	Adipocytokine signaling pathway
-mmu04921	Oxytocin signaling pathway
-mmu04922	Glucagon signaling pathway
-mmu04923	Regulation of lipolysis in adipocytes
-mmu04924	Renin secretion
-mmu04925	Aldosterone synthesis and secretion
-mmu04926	Relaxin signaling pathway
-mmu04927	Cortisol synthesis and secretion
-mmu04928	Parathyroid hormone synthesis, secretion and action
-mmu04930	Type II diabetes mellitus
-mmu04931	Insulin resistance
-mmu04932	Non-alcoholic fatty liver disease (NAFLD)
-mmu04933	AGE-RAGE signaling pathway in diabetic complications
-mmu04934	Cushing's syndrome
-mmu04940	Type I diabetes mellitus
-mmu04950	Maturity onset diabetes of the young
-mmu04960	Aldosterone-regulated sodium reabsorption
-mmu04961	Endocrine and other factor-regulated calcium reabsorption
-mmu04962	Vasopressin-regulated water reabsorption
-mmu04964	Proximal tubule bicarbonate reclamation
-mmu04966	Collecting duct acid secretion
-mmu04970	Salivary secretion
-mmu04971	Gastric acid secretion
-mmu04972	Pancreatic secretion
-mmu04973	Carbohydrate digestion and absorption
-mmu04974	Protein digestion and absorption
-mmu04975	Fat digestion and absorption
-mmu04976	Bile secretion
-mmu04977	Vitamin digestion and absorption
-mmu04978	Mineral absorption
-mmu04979	Cholesterol metabolism
-mmu05010	Alzheimer's disease
-mmu05012	Parkinson's disease
-mmu05014	Amyotrophic lateral sclerosis (ALS)
-mmu05016	Huntington's disease
-mmu05020	Prion diseases
-mmu05030	Cocaine addiction
-mmu05031	Amphetamine addiction
-mmu05032	Morphine addiction
-mmu05033	Nicotine addiction
-mmu05034	Alcoholism
-mmu05100	Bacterial invasion of epithelial cells
-mmu05132	Salmonella infection
-mmu05133	Pertussis
-mmu05134	Legionellosis
-mmu05140	Leishmaniasis
-mmu05142	Chagas disease (American trypanosomiasis)
-mmu05143	African trypanosomiasis
-mmu05144	Malaria
-mmu05145	Toxoplasmosis
-mmu05146	Amoebiasis
-mmu05150	Staphylococcus aureus infection
-mmu05152	Tuberculosis
-mmu05160	Hepatitis C
-mmu05161	Hepatitis B
-mmu05162	Measles
-mmu05163	Human cytomegalovirus infection
-mmu05164	Influenza A
-mmu05165	Human papillomavirus infection
-mmu05166	HTLV-I infection
-mmu05167	Kaposi's sarcoma-associated herpesvirus infection
-mmu05168	Herpes simplex infection
-mmu05169	Epstein-Barr virus infection
-mmu05200	Pathways in cancer
-mmu05202	Transcriptional misregulation in cancer
-mmu05203	Viral carcinogenesis
-mmu05204	Chemical carcinogenesis
-mmu05205	Proteoglycans in cancer
-mmu05206	MicroRNAs in cancer
-mmu05210	Colorectal cancer
-mmu05211	Renal cell carcinoma
-mmu05212	Pancreatic cancer
-mmu05213	Endometrial cancer
-mmu05214	Glioma
-mmu05215	Prostate cancer
-mmu05216	Thyroid cancer
-mmu05217	Basal cell carcinoma
-mmu05218	Melanoma
-mmu05219	Bladder cancer
-mmu05220	Chronic myeloid leukemia
-mmu05221	Acute myeloid leukemia
-mmu05222	Small cell lung cancer
-mmu05223	Non-small cell lung cancer
-mmu05224	Breast cancer
-mmu05225	Hepatocellular carcinoma
-mmu05226	Gastric cancer
-mmu05230	Central carbon metabolism in cancer
-mmu05231	Choline metabolism in cancer
-mmu05310	Asthma
-mmu05320	Autoimmune thyroid disease
-mmu05321	Inflammatory bowel disease (IBD)
-mmu05322	Systemic lupus erythematosus
-mmu05323	Rheumatoid arthritis
-mmu05330	Allograft rejection
-mmu05332	Graft-versus-host disease
-mmu05340	Primary immunodeficiency
-mmu05410	Hypertrophic cardiomyopathy (HCM)
-mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
-mmu05414	Dilated cardiomyopathy (DCM)
-mmu05416	Viral myocarditis
-mmu05418	Fluid shear stress and atherosclerosis