Mercurial > repos > proteore > proteore_pathview_mapping
changeset 5:1e9db71d46f7 draft
planemo upload commit 3920c1fdf5906ee60e7f493b896df83a447a94d8-dirty
| author | proteore |
|---|---|
| date | Fri, 24 Aug 2018 08:32:17 -0400 |
| parents | 79e95b3e608f |
| children | 059f17f98ab5 |
| files | hsa_pathways.loc.sample hsa_pathways.tsv.sample mmu_pathways.loc.sample mmu_pathways.tsv.sample |
| diffstat | 4 files changed, 656 insertions(+), 656 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hsa_pathways.loc.sample Fri Aug 24 08:32:17 2018 -0400 @@ -0,0 +1,330 @@ +#value name +hsa00010 Glycolysis / Gluconeogenesis +hsa00020 Citrate cycle (TCA cycle) +hsa00030 Pentose phosphate pathway +hsa00040 Pentose and glucuronate interconversions +hsa00051 Fructose and mannose metabolism +hsa00052 Galactose metabolism +hsa00053 Ascorbate and aldarate metabolism +hsa00061 Fatty acid biosynthesis +hsa00062 Fatty acid elongation +hsa00071 Fatty acid degradation +hsa00072 Synthesis and degradation of ketone bodies +hsa00100 Steroid biosynthesis +hsa00120 Primary bile acid biosynthesis +hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis +hsa00140 Steroid hormone biosynthesis +hsa00190 Oxidative phosphorylation +hsa00220 Arginine biosynthesis +hsa00230 Purine metabolism +hsa00232 Caffeine metabolism +hsa00240 Pyrimidine metabolism +hsa00250 Alanine, aspartate and glutamate metabolism +hsa00260 Glycine, serine and threonine metabolism +hsa00270 Cysteine and methionine metabolism +hsa00280 Valine, leucine and isoleucine degradation +hsa00290 Valine, leucine and isoleucine biosynthesis +hsa00310 Lysine degradation +hsa00330 Arginine and proline metabolism +hsa00340 Histidine metabolism +hsa00350 Tyrosine metabolism +hsa00360 Phenylalanine metabolism +hsa00380 Tryptophan metabolism +hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis +hsa00410 beta-Alanine metabolism +hsa00430 Taurine and hypotaurine metabolism +hsa00440 Phosphonate and phosphinate metabolism +hsa00450 Selenocompound metabolism +hsa00471 D-Glutamine and D-glutamate metabolism +hsa00472 D-Arginine and D-ornithine metabolism +hsa00480 Glutathione metabolism +hsa00500 Starch and sucrose metabolism +hsa00510 N-Glycan biosynthesis +hsa00511 Other glycan degradation +hsa00512 Mucin type O-glycan biosynthesis +hsa00514 Other types of O-glycan biosynthesis +hsa00515 Mannose type O-glycan biosynthesis +hsa00520 Amino sugar and nucleotide sugar metabolism +hsa00524 Neomycin, kanamycin and gentamicin biosynthesis +hsa00531 Glycosaminoglycan degradation +hsa00532 Glycosaminoglycan biosynthesis +hsa00533 Glycosaminoglycan biosynthesis +hsa00534 Glycosaminoglycan biosynthesis +hsa00561 Glycerolipid metabolism +hsa00562 Inositol phosphate metabolism +hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis +hsa00564 Glycerophospholipid metabolism +hsa00565 Ether lipid metabolism +hsa00590 Arachidonic acid metabolism +hsa00591 Linoleic acid metabolism +hsa00592 alpha-Linolenic acid metabolism +hsa00600 Sphingolipid metabolism +hsa00601 Glycosphingolipid biosynthesis +hsa00603 Glycosphingolipid biosynthesis +hsa00604 Glycosphingolipid biosynthesis +hsa00620 Pyruvate metabolism +hsa00630 Glyoxylate and dicarboxylate metabolism +hsa00640 Propanoate metabolism +hsa00650 Butanoate metabolism +hsa00670 One carbon pool by folate +hsa00730 Thiamine metabolism +hsa00740 Riboflavin metabolism +hsa00750 Vitamin B6 metabolism +hsa00760 Nicotinate and nicotinamide metabolism +hsa00770 Pantothenate and CoA biosynthesis +hsa00780 Biotin metabolism +hsa00785 Lipoic acid metabolism +hsa00790 Folate biosynthesis +hsa00830 Retinol metabolism +hsa00860 Porphyrin and chlorophyll metabolism +hsa00900 Terpenoid backbone biosynthesis +hsa00910 Nitrogen metabolism +hsa00920 Sulfur metabolism +hsa00970 Aminoacyl-tRNA biosynthesis +hsa00980 Metabolism of xenobiotics by cytochrome P450 +hsa00982 Drug metabolism +hsa00983 Drug metabolism +hsa01040 Biosynthesis of unsaturated fatty acids +hsa01100 Metabolic pathways +hsa01200 Carbon metabolism +hsa01210 2-Oxocarboxylic acid metabolism +hsa01212 Fatty acid metabolism +hsa01230 Biosynthesis of amino acids +hsa01521 EGFR tyrosine kinase inhibitor resistance +hsa01522 Endocrine resistance +hsa01523 Antifolate resistance +hsa01524 Platinum drug resistance +hsa02010 ABC transporters +hsa03008 Ribosome biogenesis in eukaryotes +hsa03010 Ribosome +hsa03013 RNA transport +hsa03015 mRNA surveillance pathway +hsa03018 RNA degradation +hsa03020 RNA polymerase +hsa03022 Basal transcription factors +hsa03030 DNA replication +hsa03040 Spliceosome +hsa03050 Proteasome +hsa03060 Protein export +hsa03320 PPAR signaling pathway +hsa03410 Base excision repair +hsa03420 Nucleotide excision repair +hsa03430 Mismatch repair +hsa03440 Homologous recombination +hsa03450 Non-homologous end-joining +hsa03460 Fanconi anemia pathway +hsa04010 MAPK signaling pathway +hsa04012 ErbB signaling pathway +hsa04014 Ras signaling pathway +hsa04015 Rap1 signaling pathway +hsa04020 Calcium signaling pathway +hsa04022 cGMP-PKG signaling pathway +hsa04024 cAMP signaling pathway +hsa04060 Cytokine-cytokine receptor interaction +hsa04062 Chemokine signaling pathway +hsa04064 NF-kappa B signaling pathway +hsa04066 HIF-1 signaling pathway +hsa04068 FoxO signaling pathway +hsa04070 Phosphatidylinositol signaling system +hsa04071 Sphingolipid signaling pathway +hsa04072 Phospholipase D signaling pathway +hsa04080 Neuroactive ligand-receptor interaction +hsa04110 Cell cycle +hsa04114 Oocyte meiosis +hsa04115 p53 signaling pathway +hsa04120 Ubiquitin mediated proteolysis +hsa04122 Sulfur relay system +hsa04130 SNARE interactions in vesicular transport +hsa04136 Autophagy +hsa04137 Mitophagy +hsa04140 Autophagy +hsa04141 Protein processing in endoplasmic reticulum +hsa04142 Lysosome +hsa04144 Endocytosis +hsa04145 Phagosome +hsa04146 Peroxisome +hsa04150 mTOR signaling pathway +hsa04151 PI3K-Akt signaling pathway +hsa04152 AMPK signaling pathway +hsa04210 Apoptosis +hsa04211 Longevity regulating pathway +hsa04213 Longevity regulating pathway +hsa04215 Apoptosis +hsa04216 Ferroptosis +hsa04217 Necroptosis +hsa04218 Cellular senescence +hsa04260 Cardiac muscle contraction +hsa04261 Adrenergic signaling in cardiomyocytes +hsa04270 Vascular smooth muscle contraction +hsa04310 Wnt signaling pathway +hsa04330 Notch signaling pathway +hsa04340 Hedgehog signaling pathway +hsa04350 TGF-beta signaling pathway +hsa04360 Axon guidance +hsa04370 VEGF signaling pathway +hsa04371 Apelin signaling pathway +hsa04380 Osteoclast differentiation +hsa04390 Hippo signaling pathway +hsa04392 Hippo signaling pathway +hsa04510 Focal adhesion +hsa04512 ECM-receptor interaction +hsa04514 Cell adhesion molecules (CAMs) +hsa04520 Adherens junction +hsa04530 Tight junction +hsa04540 Gap junction +hsa04550 Signaling pathways regulating pluripotency of stem cells +hsa04610 Complement and coagulation cascades +hsa04611 Platelet activation +hsa04612 Antigen processing and presentation +hsa04614 Renin-angiotensin system +hsa04620 Toll-like receptor signaling pathway +hsa04621 NOD-like receptor signaling pathway +hsa04622 RIG-I-like receptor signaling pathway +hsa04623 Cytosolic DNA-sensing pathway +hsa04625 C-type lectin receptor signaling pathway +hsa04630 Jak-STAT signaling pathway +hsa04640 Hematopoietic cell lineage +hsa04650 Natural killer cell mediated cytotoxicity +hsa04657 IL-17 signaling pathway +hsa04658 Th1 and Th2 cell differentiation +hsa04659 Th17 cell differentiation +hsa04660 T cell receptor signaling pathway +hsa04662 B cell receptor signaling pathway +hsa04664 Fc epsilon RI signaling pathway +hsa04666 Fc gamma R-mediated phagocytosis +hsa04668 TNF signaling pathway +hsa04670 Leukocyte transendothelial migration +hsa04672 Intestinal immune network for IgA production +hsa04710 Circadian rhythm +hsa04713 Circadian entrainment +hsa04714 Thermogenesis +hsa04720 Long-term potentiation +hsa04721 Synaptic vesicle cycle +hsa04722 Neurotrophin signaling pathway +hsa04723 Retrograde endocannabinoid signaling +hsa04724 Glutamatergic synapse +hsa04725 Cholinergic synapse +hsa04726 Serotonergic synapse +hsa04727 GABAergic synapse +hsa04728 Dopaminergic synapse +hsa04730 Long-term depression +hsa04740 Olfactory transduction +hsa04742 Taste transduction +hsa04744 Phototransduction +hsa04750 Inflammatory mediator regulation of TRP channels +hsa04810 Regulation of actin cytoskeleton +hsa04910 Insulin signaling pathway +hsa04911 Insulin secretion +hsa04912 GnRH signaling pathway +hsa04913 Ovarian steroidogenesis +hsa04914 Progesterone-mediated oocyte maturation +hsa04915 Estrogen signaling pathway +hsa04916 Melanogenesis +hsa04917 Prolactin signaling pathway +hsa04918 Thyroid hormone synthesis +hsa04919 Thyroid hormone signaling pathway +hsa04920 Adipocytokine signaling pathway +hsa04921 Oxytocin signaling pathway +hsa04922 Glucagon signaling pathway +hsa04923 Regulation of lipolysis in adipocytes +hsa04924 Renin secretion +hsa04925 Aldosterone synthesis and secretion +hsa04926 Relaxin signaling pathway +hsa04927 Cortisol synthesis and secretion +hsa04928 Parathyroid hormone synthesis, secretion and action +hsa04930 Type II diabetes mellitus +hsa04931 Insulin resistance +hsa04932 Non-alcoholic fatty liver disease (NAFLD) +hsa04933 AGE-RAGE signaling pathway in diabetic complications +hsa04934 Cushing's syndrome +hsa04940 Type I diabetes mellitus +hsa04950 Maturity onset diabetes of the young +hsa04960 Aldosterone-regulated sodium reabsorption +hsa04961 Endocrine and other factor-regulated calcium reabsorption +hsa04962 Vasopressin-regulated water reabsorption +hsa04964 Proximal tubule bicarbonate reclamation +hsa04966 Collecting duct acid secretion +hsa04970 Salivary secretion +hsa04971 Gastric acid secretion +hsa04972 Pancreatic secretion +hsa04973 Carbohydrate digestion and absorption +hsa04974 Protein digestion and absorption +hsa04975 Fat digestion and absorption +hsa04976 Bile secretion +hsa04977 Vitamin digestion and absorption +hsa04978 Mineral absorption +hsa04979 Cholesterol metabolism +hsa05010 Alzheimer's disease +hsa05012 Parkinson's disease +hsa05014 Amyotrophic lateral sclerosis (ALS) +hsa05016 Huntington's disease +hsa05020 Prion diseases +hsa05030 Cocaine addiction +hsa05031 Amphetamine addiction +hsa05032 Morphine addiction +hsa05033 Nicotine addiction +hsa05034 Alcoholism +hsa05100 Bacterial invasion of epithelial cells +hsa05110 Vibrio cholerae infection +hsa05120 Epithelial cell signaling in Helicobacter pylori infection +hsa05130 Pathogenic Escherichia coli infection +hsa05131 Shigellosis +hsa05132 Salmonella infection +hsa05133 Pertussis +hsa05134 Legionellosis +hsa05140 Leishmaniasis +hsa05142 Chagas disease (American trypanosomiasis) +hsa05143 African trypanosomiasis +hsa05144 Malaria +hsa05145 Toxoplasmosis +hsa05146 Amoebiasis +hsa05150 Staphylococcus aureus infection +hsa05152 Tuberculosis +hsa05160 Hepatitis C +hsa05161 Hepatitis B +hsa05162 Measles +hsa05163 Human cytomegalovirus infection +hsa05164 Influenza A +hsa05165 Human papillomavirus infection +hsa05166 HTLV-I infection +hsa05167 Kaposi's sarcoma-associated herpesvirus infection +hsa05168 Herpes simplex infection +hsa05169 Epstein-Barr virus infection +hsa05200 Pathways in cancer +hsa05202 Transcriptional misregulation in cancer +hsa05203 Viral carcinogenesis +hsa05204 Chemical carcinogenesis +hsa05205 Proteoglycans in cancer +hsa05206 MicroRNAs in cancer +hsa05210 Colorectal cancer +hsa05211 Renal cell carcinoma +hsa05212 Pancreatic cancer +hsa05213 Endometrial cancer +hsa05214 Glioma +hsa05215 Prostate cancer +hsa05216 Thyroid cancer +hsa05217 Basal cell carcinoma +hsa05218 Melanoma +hsa05219 Bladder cancer +hsa05220 Chronic myeloid leukemia +hsa05221 Acute myeloid leukemia +hsa05222 Small cell lung cancer +hsa05223 Non-small cell lung cancer +hsa05224 Breast cancer +hsa05225 Hepatocellular carcinoma +hsa05226 Gastric cancer +hsa05230 Central carbon metabolism in cancer +hsa05231 Choline metabolism in cancer +hsa05310 Asthma +hsa05320 Autoimmune thyroid disease +hsa05321 Inflammatory bowel disease (IBD) +hsa05322 Systemic lupus erythematosus +hsa05323 Rheumatoid arthritis +hsa05330 Allograft rejection +hsa05332 Graft-versus-host disease +hsa05340 Primary immunodeficiency +hsa05410 Hypertrophic cardiomyopathy (HCM) +hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) +hsa05414 Dilated cardiomyopathy (DCM) +hsa05416 Viral myocarditis +hsa05418 Fluid shear stress and atherosclerosis
--- a/hsa_pathways.tsv.sample Fri Aug 24 08:29:55 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,330 +0,0 @@ -#value name -hsa00010 Glycolysis / Gluconeogenesis -hsa00020 Citrate cycle (TCA cycle) -hsa00030 Pentose phosphate pathway -hsa00040 Pentose and glucuronate interconversions -hsa00051 Fructose and mannose metabolism -hsa00052 Galactose metabolism -hsa00053 Ascorbate and aldarate metabolism -hsa00061 Fatty acid biosynthesis -hsa00062 Fatty acid elongation -hsa00071 Fatty acid degradation -hsa00072 Synthesis and degradation of ketone bodies -hsa00100 Steroid biosynthesis -hsa00120 Primary bile acid biosynthesis -hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis -hsa00140 Steroid hormone biosynthesis -hsa00190 Oxidative phosphorylation -hsa00220 Arginine biosynthesis -hsa00230 Purine metabolism -hsa00232 Caffeine metabolism -hsa00240 Pyrimidine metabolism -hsa00250 Alanine, aspartate and glutamate metabolism -hsa00260 Glycine, serine and threonine metabolism -hsa00270 Cysteine and methionine metabolism -hsa00280 Valine, leucine and isoleucine degradation -hsa00290 Valine, leucine and isoleucine biosynthesis -hsa00310 Lysine degradation -hsa00330 Arginine and proline metabolism -hsa00340 Histidine metabolism -hsa00350 Tyrosine metabolism -hsa00360 Phenylalanine metabolism -hsa00380 Tryptophan metabolism -hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis -hsa00410 beta-Alanine metabolism -hsa00430 Taurine and hypotaurine metabolism -hsa00440 Phosphonate and phosphinate metabolism -hsa00450 Selenocompound metabolism -hsa00471 D-Glutamine and D-glutamate metabolism -hsa00472 D-Arginine and D-ornithine metabolism -hsa00480 Glutathione metabolism -hsa00500 Starch and sucrose metabolism -hsa00510 N-Glycan biosynthesis -hsa00511 Other glycan degradation -hsa00512 Mucin type O-glycan biosynthesis -hsa00514 Other types of O-glycan biosynthesis -hsa00515 Mannose type O-glycan biosynthesis -hsa00520 Amino sugar and nucleotide sugar metabolism -hsa00524 Neomycin, kanamycin and gentamicin biosynthesis -hsa00531 Glycosaminoglycan degradation -hsa00532 Glycosaminoglycan biosynthesis -hsa00533 Glycosaminoglycan biosynthesis -hsa00534 Glycosaminoglycan biosynthesis -hsa00561 Glycerolipid metabolism -hsa00562 Inositol phosphate metabolism -hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis -hsa00564 Glycerophospholipid metabolism -hsa00565 Ether lipid metabolism -hsa00590 Arachidonic acid metabolism -hsa00591 Linoleic acid metabolism -hsa00592 alpha-Linolenic acid metabolism -hsa00600 Sphingolipid metabolism -hsa00601 Glycosphingolipid biosynthesis -hsa00603 Glycosphingolipid biosynthesis -hsa00604 Glycosphingolipid biosynthesis -hsa00620 Pyruvate metabolism -hsa00630 Glyoxylate and dicarboxylate metabolism -hsa00640 Propanoate metabolism -hsa00650 Butanoate metabolism -hsa00670 One carbon pool by folate -hsa00730 Thiamine metabolism -hsa00740 Riboflavin metabolism -hsa00750 Vitamin B6 metabolism -hsa00760 Nicotinate and nicotinamide metabolism -hsa00770 Pantothenate and CoA biosynthesis -hsa00780 Biotin metabolism -hsa00785 Lipoic acid metabolism -hsa00790 Folate biosynthesis -hsa00830 Retinol metabolism -hsa00860 Porphyrin and chlorophyll metabolism -hsa00900 Terpenoid backbone biosynthesis -hsa00910 Nitrogen metabolism -hsa00920 Sulfur metabolism -hsa00970 Aminoacyl-tRNA biosynthesis -hsa00980 Metabolism of xenobiotics by cytochrome P450 -hsa00982 Drug metabolism -hsa00983 Drug metabolism -hsa01040 Biosynthesis of unsaturated fatty acids -hsa01100 Metabolic pathways -hsa01200 Carbon metabolism -hsa01210 2-Oxocarboxylic acid metabolism -hsa01212 Fatty acid metabolism -hsa01230 Biosynthesis of amino acids -hsa01521 EGFR tyrosine kinase inhibitor resistance -hsa01522 Endocrine resistance -hsa01523 Antifolate resistance -hsa01524 Platinum drug resistance -hsa02010 ABC transporters -hsa03008 Ribosome biogenesis in eukaryotes -hsa03010 Ribosome -hsa03013 RNA transport -hsa03015 mRNA surveillance pathway -hsa03018 RNA degradation -hsa03020 RNA polymerase -hsa03022 Basal transcription factors -hsa03030 DNA replication -hsa03040 Spliceosome -hsa03050 Proteasome -hsa03060 Protein export -hsa03320 PPAR signaling pathway -hsa03410 Base excision repair -hsa03420 Nucleotide excision repair -hsa03430 Mismatch repair -hsa03440 Homologous recombination -hsa03450 Non-homologous end-joining -hsa03460 Fanconi anemia pathway -hsa04010 MAPK signaling pathway -hsa04012 ErbB signaling pathway -hsa04014 Ras signaling pathway -hsa04015 Rap1 signaling pathway -hsa04020 Calcium signaling pathway -hsa04022 cGMP-PKG signaling pathway -hsa04024 cAMP signaling pathway -hsa04060 Cytokine-cytokine receptor interaction -hsa04062 Chemokine signaling pathway -hsa04064 NF-kappa B signaling pathway -hsa04066 HIF-1 signaling pathway -hsa04068 FoxO signaling pathway -hsa04070 Phosphatidylinositol signaling system -hsa04071 Sphingolipid signaling pathway -hsa04072 Phospholipase D signaling pathway -hsa04080 Neuroactive ligand-receptor interaction -hsa04110 Cell cycle -hsa04114 Oocyte meiosis -hsa04115 p53 signaling pathway -hsa04120 Ubiquitin mediated proteolysis -hsa04122 Sulfur relay system -hsa04130 SNARE interactions in vesicular transport -hsa04136 Autophagy -hsa04137 Mitophagy -hsa04140 Autophagy -hsa04141 Protein processing in endoplasmic reticulum -hsa04142 Lysosome -hsa04144 Endocytosis -hsa04145 Phagosome -hsa04146 Peroxisome -hsa04150 mTOR signaling pathway -hsa04151 PI3K-Akt signaling pathway -hsa04152 AMPK signaling pathway -hsa04210 Apoptosis -hsa04211 Longevity regulating pathway -hsa04213 Longevity regulating pathway -hsa04215 Apoptosis -hsa04216 Ferroptosis -hsa04217 Necroptosis -hsa04218 Cellular senescence -hsa04260 Cardiac muscle contraction -hsa04261 Adrenergic signaling in cardiomyocytes -hsa04270 Vascular smooth muscle contraction -hsa04310 Wnt signaling pathway -hsa04330 Notch signaling pathway -hsa04340 Hedgehog signaling pathway -hsa04350 TGF-beta signaling pathway -hsa04360 Axon guidance -hsa04370 VEGF signaling pathway -hsa04371 Apelin signaling pathway -hsa04380 Osteoclast differentiation -hsa04390 Hippo signaling pathway -hsa04392 Hippo signaling pathway -hsa04510 Focal adhesion -hsa04512 ECM-receptor interaction -hsa04514 Cell adhesion molecules (CAMs) -hsa04520 Adherens junction -hsa04530 Tight junction -hsa04540 Gap junction -hsa04550 Signaling pathways regulating pluripotency of stem cells -hsa04610 Complement and coagulation cascades -hsa04611 Platelet activation -hsa04612 Antigen processing and presentation -hsa04614 Renin-angiotensin system -hsa04620 Toll-like receptor signaling pathway -hsa04621 NOD-like receptor signaling pathway -hsa04622 RIG-I-like receptor signaling pathway -hsa04623 Cytosolic DNA-sensing pathway -hsa04625 C-type lectin receptor signaling pathway -hsa04630 Jak-STAT signaling pathway -hsa04640 Hematopoietic cell lineage -hsa04650 Natural killer cell mediated cytotoxicity -hsa04657 IL-17 signaling pathway -hsa04658 Th1 and Th2 cell differentiation -hsa04659 Th17 cell differentiation -hsa04660 T cell receptor signaling pathway -hsa04662 B cell receptor signaling pathway -hsa04664 Fc epsilon RI signaling pathway -hsa04666 Fc gamma R-mediated phagocytosis -hsa04668 TNF signaling pathway -hsa04670 Leukocyte transendothelial migration -hsa04672 Intestinal immune network for IgA production -hsa04710 Circadian rhythm -hsa04713 Circadian entrainment -hsa04714 Thermogenesis -hsa04720 Long-term potentiation -hsa04721 Synaptic vesicle cycle -hsa04722 Neurotrophin signaling pathway -hsa04723 Retrograde endocannabinoid signaling -hsa04724 Glutamatergic synapse -hsa04725 Cholinergic synapse -hsa04726 Serotonergic synapse -hsa04727 GABAergic synapse -hsa04728 Dopaminergic synapse -hsa04730 Long-term depression -hsa04740 Olfactory transduction -hsa04742 Taste transduction -hsa04744 Phototransduction -hsa04750 Inflammatory mediator regulation of TRP channels -hsa04810 Regulation of actin cytoskeleton -hsa04910 Insulin signaling pathway -hsa04911 Insulin secretion -hsa04912 GnRH signaling pathway -hsa04913 Ovarian steroidogenesis -hsa04914 Progesterone-mediated oocyte maturation -hsa04915 Estrogen signaling pathway -hsa04916 Melanogenesis -hsa04917 Prolactin signaling pathway -hsa04918 Thyroid hormone synthesis -hsa04919 Thyroid hormone signaling pathway -hsa04920 Adipocytokine signaling pathway -hsa04921 Oxytocin signaling pathway -hsa04922 Glucagon signaling pathway -hsa04923 Regulation of lipolysis in adipocytes -hsa04924 Renin secretion -hsa04925 Aldosterone synthesis and secretion -hsa04926 Relaxin signaling pathway -hsa04927 Cortisol synthesis and secretion -hsa04928 Parathyroid hormone synthesis, secretion and action -hsa04930 Type II diabetes mellitus -hsa04931 Insulin resistance -hsa04932 Non-alcoholic fatty liver disease (NAFLD) -hsa04933 AGE-RAGE signaling pathway in diabetic complications -hsa04934 Cushing's syndrome -hsa04940 Type I diabetes mellitus -hsa04950 Maturity onset diabetes of the young -hsa04960 Aldosterone-regulated sodium reabsorption -hsa04961 Endocrine and other factor-regulated calcium reabsorption -hsa04962 Vasopressin-regulated water reabsorption -hsa04964 Proximal tubule bicarbonate reclamation -hsa04966 Collecting duct acid secretion -hsa04970 Salivary secretion -hsa04971 Gastric acid secretion -hsa04972 Pancreatic secretion -hsa04973 Carbohydrate digestion and absorption -hsa04974 Protein digestion and absorption -hsa04975 Fat digestion and absorption -hsa04976 Bile secretion -hsa04977 Vitamin digestion and absorption -hsa04978 Mineral absorption -hsa04979 Cholesterol metabolism -hsa05010 Alzheimer's disease -hsa05012 Parkinson's disease -hsa05014 Amyotrophic lateral sclerosis (ALS) -hsa05016 Huntington's disease -hsa05020 Prion diseases -hsa05030 Cocaine addiction -hsa05031 Amphetamine addiction -hsa05032 Morphine addiction -hsa05033 Nicotine addiction -hsa05034 Alcoholism -hsa05100 Bacterial invasion of epithelial cells -hsa05110 Vibrio cholerae infection -hsa05120 Epithelial cell signaling in Helicobacter pylori infection -hsa05130 Pathogenic Escherichia coli infection -hsa05131 Shigellosis -hsa05132 Salmonella infection -hsa05133 Pertussis -hsa05134 Legionellosis -hsa05140 Leishmaniasis -hsa05142 Chagas disease (American trypanosomiasis) -hsa05143 African trypanosomiasis -hsa05144 Malaria -hsa05145 Toxoplasmosis -hsa05146 Amoebiasis -hsa05150 Staphylococcus aureus infection -hsa05152 Tuberculosis -hsa05160 Hepatitis C -hsa05161 Hepatitis B -hsa05162 Measles -hsa05163 Human cytomegalovirus infection -hsa05164 Influenza A -hsa05165 Human papillomavirus infection -hsa05166 HTLV-I infection -hsa05167 Kaposi's sarcoma-associated herpesvirus infection -hsa05168 Herpes simplex infection -hsa05169 Epstein-Barr virus infection -hsa05200 Pathways in cancer -hsa05202 Transcriptional misregulation in cancer -hsa05203 Viral carcinogenesis -hsa05204 Chemical carcinogenesis -hsa05205 Proteoglycans in cancer -hsa05206 MicroRNAs in cancer -hsa05210 Colorectal cancer -hsa05211 Renal cell carcinoma -hsa05212 Pancreatic cancer -hsa05213 Endometrial cancer -hsa05214 Glioma -hsa05215 Prostate cancer -hsa05216 Thyroid cancer -hsa05217 Basal cell carcinoma -hsa05218 Melanoma -hsa05219 Bladder cancer -hsa05220 Chronic myeloid leukemia -hsa05221 Acute myeloid leukemia -hsa05222 Small cell lung cancer -hsa05223 Non-small cell lung cancer -hsa05224 Breast cancer -hsa05225 Hepatocellular carcinoma -hsa05226 Gastric cancer -hsa05230 Central carbon metabolism in cancer -hsa05231 Choline metabolism in cancer -hsa05310 Asthma -hsa05320 Autoimmune thyroid disease -hsa05321 Inflammatory bowel disease (IBD) -hsa05322 Systemic lupus erythematosus -hsa05323 Rheumatoid arthritis -hsa05330 Allograft rejection -hsa05332 Graft-versus-host disease -hsa05340 Primary immunodeficiency -hsa05410 Hypertrophic cardiomyopathy (HCM) -hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) -hsa05414 Dilated cardiomyopathy (DCM) -hsa05416 Viral myocarditis -hsa05418 Fluid shear stress and atherosclerosis
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mmu_pathways.loc.sample Fri Aug 24 08:32:17 2018 -0400 @@ -0,0 +1,326 @@ +#value name +mmu00010 Glycolysis / Gluconeogenesis +mmu00020 Citrate cycle (TCA cycle) +mmu00030 Pentose phosphate pathway +mmu00040 Pentose and glucuronate interconversions +mmu00051 Fructose and mannose metabolism +mmu00052 Galactose metabolism +mmu00053 Ascorbate and aldarate metabolism +mmu00061 Fatty acid biosynthesis +mmu00062 Fatty acid elongation +mmu00071 Fatty acid degradation +mmu00072 Synthesis and degradation of ketone bodies +mmu00100 Steroid biosynthesis +mmu00120 Primary bile acid biosynthesis +mmu00130 Ubiquinone and other terpenoid-quinone biosynthesis +mmu00140 Steroid hormone biosynthesis +mmu00190 Oxidative phosphorylation +mmu00220 Arginine biosynthesis +mmu00230 Purine metabolism +mmu00232 Caffeine metabolism +mmu00240 Pyrimidine metabolism +mmu00250 Alanine, aspartate and glutamate metabolism +mmu00260 Glycine, serine and threonine metabolism +mmu00270 Cysteine and methionine metabolism +mmu00280 Valine, leucine and isoleucine degradation +mmu00290 Valine, leucine and isoleucine biosynthesis +mmu00310 Lysine degradation +mmu00330 Arginine and proline metabolism +mmu00340 Histidine metabolism +mmu00350 Tyrosine metabolism +mmu00360 Phenylalanine metabolism +mmu00380 Tryptophan metabolism +mmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis +mmu00410 beta-Alanine metabolism +mmu00430 Taurine and hypotaurine metabolism +mmu00440 Phosphonate and phosphinate metabolism +mmu00450 Selenocompound metabolism +mmu00471 D-Glutamine and D-glutamate metabolism +mmu00472 D-Arginine and D-ornithine metabolism +mmu00480 Glutathione metabolism +mmu00500 Starch and sucrose metabolism +mmu00510 N-Glycan biosynthesis +mmu00511 Other glycan degradation +mmu00512 Mucin type O-glycan biosynthesis +mmu00514 Other types of O-glycan biosynthesis +mmu00515 Mannose type O-glycan biosynthesis +mmu00520 Amino sugar and nucleotide sugar metabolism +mmu00524 Neomycin, kanamycin and gentamicin biosynthesis +mmu00531 Glycosaminoglycan degradation +mmu00532 Glycosaminoglycan biosynthesis +mmu00533 Glycosaminoglycan biosynthesis +mmu00534 Glycosaminoglycan biosynthesis +mmu00561 Glycerolipid metabolism +mmu00562 Inositol phosphate metabolism +mmu00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis +mmu00564 Glycerophospholipid metabolism +mmu00565 Ether lipid metabolism +mmu00590 Arachidonic acid metabolism +mmu00591 Linoleic acid metabolism +mmu00592 alpha-Linolenic acid metabolism +mmu00600 Sphingolipid metabolism +mmu00601 Glycosphingolipid biosynthesis +mmu00603 Glycosphingolipid biosynthesis +mmu00604 Glycosphingolipid biosynthesis +mmu00620 Pyruvate metabolism +mmu00630 Glyoxylate and dicarboxylate metabolism +mmu00640 Propanoate metabolism +mmu00650 Butanoate metabolism +mmu00670 One carbon pool by folate +mmu00730 Thiamine metabolism +mmu00740 Riboflavin metabolism +mmu00750 Vitamin B6 metabolism +mmu00760 Nicotinate and nicotinamide metabolism +mmu00770 Pantothenate and CoA biosynthesis +mmu00780 Biotin metabolism +mmu00785 Lipoic acid metabolism +mmu00790 Folate biosynthesis +mmu00830 Retinol metabolism +mmu00860 Porphyrin and chlorophyll metabolism +mmu00900 Terpenoid backbone biosynthesis +mmu00910 Nitrogen metabolism +mmu00920 Sulfur metabolism +mmu00970 Aminoacyl-tRNA biosynthesis +mmu00980 Metabolism of xenobiotics by cytochrome P450 +mmu00982 Drug metabolism +mmu00983 Drug metabolism +mmu01040 Biosynthesis of unsaturated fatty acids +mmu01100 Metabolic pathways +mmu01200 Carbon metabolism +mmu01210 2-Oxocarboxylic acid metabolism +mmu01212 Fatty acid metabolism +mmu01230 Biosynthesis of amino acids +mmu01521 EGFR tyrosine kinase inhibitor resistance +mmu01522 Endocrine resistance +mmu01523 Antifolate resistance +mmu01524 Platinum drug resistance +mmu02010 ABC transporters +mmu03008 Ribosome biogenesis in eukaryotes +mmu03010 Ribosome +mmu03013 RNA transport +mmu03015 mRNA surveillance pathway +mmu03018 RNA degradation +mmu03020 RNA polymerase +mmu03022 Basal transcription factors +mmu03030 DNA replication +mmu03040 Spliceosome +mmu03050 Proteasome +mmu03060 Protein export +mmu03320 PPAR signaling pathway +mmu03410 Base excision repair +mmu03420 Nucleotide excision repair +mmu03430 Mismatch repair +mmu03440 Homologous recombination +mmu03450 Non-homologous end-joining +mmu03460 Fanconi anemia pathway +mmu04010 MAPK signaling pathway +mmu04012 ErbB signaling pathway +mmu04014 Ras signaling pathway +mmu04015 Rap1 signaling pathway +mmu04020 Calcium signaling pathway +mmu04022 cGMP-PKG signaling pathway +mmu04024 cAMP signaling pathway +mmu04060 Cytokine-cytokine receptor interaction +mmu04062 Chemokine signaling pathway +mmu04064 NF-kappa B signaling pathway +mmu04066 HIF-1 signaling pathway +mmu04068 FoxO signaling pathway +mmu04070 Phosphatidylinositol signaling system +mmu04071 Sphingolipid signaling pathway +mmu04072 Phospholipase D signaling pathway +mmu04080 Neuroactive ligand-receptor interaction +mmu04110 Cell cycle +mmu04114 Oocyte meiosis +mmu04115 p53 signaling pathway +mmu04120 Ubiquitin mediated proteolysis +mmu04122 Sulfur relay system +mmu04130 SNARE interactions in vesicular transport +mmu04136 Autophagy +mmu04137 Mitophagy +mmu04140 Autophagy +mmu04141 Protein processing in endoplasmic reticulum +mmu04142 Lysosome +mmu04144 Endocytosis +mmu04145 Phagosome +mmu04146 Peroxisome +mmu04150 mTOR signaling pathway +mmu04151 PI3K-Akt signaling pathway +mmu04152 AMPK signaling pathway +mmu04210 Apoptosis +mmu04211 Longevity regulating pathway +mmu04213 Longevity regulating pathway +mmu04215 Apoptosis +mmu04216 Ferroptosis +mmu04217 Necroptosis +mmu04218 Cellular senescence +mmu04260 Cardiac muscle contraction +mmu04261 Adrenergic signaling in cardiomyocytes +mmu04270 Vascular smooth muscle contraction +mmu04310 Wnt signaling pathway +mmu04330 Notch signaling pathway +mmu04340 Hedgehog signaling pathway +mmu04350 TGF-beta signaling pathway +mmu04360 Axon guidance +mmu04370 VEGF signaling pathway +mmu04371 Apelin signaling pathway +mmu04380 Osteoclast differentiation +mmu04390 Hippo signaling pathway +mmu04392 Hippo signaling pathway +mmu04510 Focal adhesion +mmu04512 ECM-receptor interaction +mmu04514 Cell adhesion molecules (CAMs) +mmu04520 Adherens junction +mmu04530 Tight junction +mmu04540 Gap junction +mmu04550 Signaling pathways regulating pluripotency of stem cells +mmu04610 Complement and coagulation cascades +mmu04611 Platelet activation +mmu04612 Antigen processing and presentation +mmu04614 Renin-angiotensin system +mmu04620 Toll-like receptor signaling pathway +mmu04621 NOD-like receptor signaling pathway +mmu04622 RIG-I-like receptor signaling pathway +mmu04623 Cytosolic DNA-sensing pathway +mmu04625 C-type lectin receptor signaling pathway +mmu04630 Jak-STAT signaling pathway +mmu04640 Hematopoietic cell lineage +mmu04650 Natural killer cell mediated cytotoxicity +mmu04657 IL-17 signaling pathway +mmu04658 Th1 and Th2 cell differentiation +mmu04659 Th17 cell differentiation +mmu04660 T cell receptor signaling pathway +mmu04662 B cell receptor signaling pathway +mmu04664 Fc epsilon RI signaling pathway +mmu04666 Fc gamma R-mediated phagocytosis +mmu04668 TNF signaling pathway +mmu04670 Leukocyte transendothelial migration +mmu04672 Intestinal immune network for IgA production +mmu04710 Circadian rhythm +mmu04713 Circadian entrainment +mmu04714 Thermogenesis +mmu04720 Long-term potentiation +mmu04721 Synaptic vesicle cycle +mmu04722 Neurotrophin signaling pathway +mmu04723 Retrograde endocannabinoid signaling +mmu04724 Glutamatergic synapse +mmu04725 Cholinergic synapse +mmu04726 Serotonergic synapse +mmu04727 GABAergic synapse +mmu04728 Dopaminergic synapse +mmu04730 Long-term depression +mmu04740 Olfactory transduction +mmu04742 Taste transduction +mmu04744 Phototransduction +mmu04750 Inflammatory mediator regulation of TRP channels +mmu04810 Regulation of actin cytoskeleton +mmu04910 Insulin signaling pathway +mmu04911 Insulin secretion +mmu04912 GnRH signaling pathway +mmu04913 Ovarian steroidogenesis +mmu04914 Progesterone-mediated oocyte maturation +mmu04915 Estrogen signaling pathway +mmu04916 Melanogenesis +mmu04917 Prolactin signaling pathway +mmu04918 Thyroid hormone synthesis +mmu04919 Thyroid hormone signaling pathway +mmu04920 Adipocytokine signaling pathway +mmu04921 Oxytocin signaling pathway +mmu04922 Glucagon signaling pathway +mmu04923 Regulation of lipolysis in adipocytes +mmu04924 Renin secretion +mmu04925 Aldosterone synthesis and secretion +mmu04926 Relaxin signaling pathway +mmu04927 Cortisol synthesis and secretion +mmu04928 Parathyroid hormone synthesis, secretion and action +mmu04930 Type II diabetes mellitus +mmu04931 Insulin resistance +mmu04932 Non-alcoholic fatty liver disease (NAFLD) +mmu04933 AGE-RAGE signaling pathway in diabetic complications +mmu04934 Cushing's syndrome +mmu04940 Type I diabetes mellitus +mmu04950 Maturity onset diabetes of the young +mmu04960 Aldosterone-regulated sodium reabsorption +mmu04961 Endocrine and other factor-regulated calcium reabsorption +mmu04962 Vasopressin-regulated water reabsorption +mmu04964 Proximal tubule bicarbonate reclamation +mmu04966 Collecting duct acid secretion +mmu04970 Salivary secretion +mmu04971 Gastric acid secretion +mmu04972 Pancreatic secretion +mmu04973 Carbohydrate digestion and absorption +mmu04974 Protein digestion and absorption +mmu04975 Fat digestion and absorption +mmu04976 Bile secretion +mmu04977 Vitamin digestion and absorption +mmu04978 Mineral absorption +mmu04979 Cholesterol metabolism +mmu05010 Alzheimer's disease +mmu05012 Parkinson's disease +mmu05014 Amyotrophic lateral sclerosis (ALS) +mmu05016 Huntington's disease +mmu05020 Prion diseases +mmu05030 Cocaine addiction +mmu05031 Amphetamine addiction +mmu05032 Morphine addiction +mmu05033 Nicotine addiction +mmu05034 Alcoholism +mmu05100 Bacterial invasion of epithelial cells +mmu05132 Salmonella infection +mmu05133 Pertussis +mmu05134 Legionellosis +mmu05140 Leishmaniasis +mmu05142 Chagas disease (American trypanosomiasis) +mmu05143 African trypanosomiasis +mmu05144 Malaria +mmu05145 Toxoplasmosis +mmu05146 Amoebiasis +mmu05150 Staphylococcus aureus infection +mmu05152 Tuberculosis +mmu05160 Hepatitis C +mmu05161 Hepatitis B +mmu05162 Measles +mmu05163 Human cytomegalovirus infection +mmu05164 Influenza A +mmu05165 Human papillomavirus infection +mmu05166 HTLV-I infection +mmu05167 Kaposi's sarcoma-associated herpesvirus infection +mmu05168 Herpes simplex infection +mmu05169 Epstein-Barr virus infection +mmu05200 Pathways in cancer +mmu05202 Transcriptional misregulation in cancer +mmu05203 Viral carcinogenesis +mmu05204 Chemical carcinogenesis +mmu05205 Proteoglycans in cancer +mmu05206 MicroRNAs in cancer +mmu05210 Colorectal cancer +mmu05211 Renal cell carcinoma +mmu05212 Pancreatic cancer +mmu05213 Endometrial cancer +mmu05214 Glioma +mmu05215 Prostate cancer +mmu05216 Thyroid cancer +mmu05217 Basal cell carcinoma +mmu05218 Melanoma +mmu05219 Bladder cancer +mmu05220 Chronic myeloid leukemia +mmu05221 Acute myeloid leukemia +mmu05222 Small cell lung cancer +mmu05223 Non-small cell lung cancer +mmu05224 Breast cancer +mmu05225 Hepatocellular carcinoma +mmu05226 Gastric cancer +mmu05230 Central carbon metabolism in cancer +mmu05231 Choline metabolism in cancer +mmu05310 Asthma +mmu05320 Autoimmune thyroid disease +mmu05321 Inflammatory bowel disease (IBD) +mmu05322 Systemic lupus erythematosus +mmu05323 Rheumatoid arthritis +mmu05330 Allograft rejection +mmu05332 Graft-versus-host disease +mmu05340 Primary immunodeficiency +mmu05410 Hypertrophic cardiomyopathy (HCM) +mmu05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) +mmu05414 Dilated cardiomyopathy (DCM) +mmu05416 Viral myocarditis +mmu05418 Fluid shear stress and atherosclerosis
--- a/mmu_pathways.tsv.sample Fri Aug 24 08:29:55 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,326 +0,0 @@ -#value name -mmu00010 Glycolysis / Gluconeogenesis -mmu00020 Citrate cycle (TCA cycle) -mmu00030 Pentose phosphate pathway -mmu00040 Pentose and glucuronate interconversions -mmu00051 Fructose and mannose metabolism -mmu00052 Galactose metabolism -mmu00053 Ascorbate and aldarate metabolism -mmu00061 Fatty acid biosynthesis -mmu00062 Fatty acid elongation -mmu00071 Fatty acid degradation -mmu00072 Synthesis and degradation of ketone bodies -mmu00100 Steroid biosynthesis -mmu00120 Primary bile acid biosynthesis -mmu00130 Ubiquinone and other terpenoid-quinone biosynthesis -mmu00140 Steroid hormone biosynthesis -mmu00190 Oxidative phosphorylation -mmu00220 Arginine biosynthesis -mmu00230 Purine metabolism -mmu00232 Caffeine metabolism -mmu00240 Pyrimidine metabolism -mmu00250 Alanine, aspartate and glutamate metabolism -mmu00260 Glycine, serine and threonine metabolism -mmu00270 Cysteine and methionine metabolism -mmu00280 Valine, leucine and isoleucine degradation -mmu00290 Valine, leucine and isoleucine biosynthesis -mmu00310 Lysine degradation -mmu00330 Arginine and proline metabolism -mmu00340 Histidine metabolism -mmu00350 Tyrosine metabolism -mmu00360 Phenylalanine metabolism -mmu00380 Tryptophan metabolism -mmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis -mmu00410 beta-Alanine metabolism -mmu00430 Taurine and hypotaurine metabolism -mmu00440 Phosphonate and phosphinate metabolism -mmu00450 Selenocompound metabolism -mmu00471 D-Glutamine and D-glutamate metabolism -mmu00472 D-Arginine and D-ornithine metabolism -mmu00480 Glutathione metabolism -mmu00500 Starch and sucrose metabolism -mmu00510 N-Glycan biosynthesis -mmu00511 Other glycan degradation -mmu00512 Mucin type O-glycan biosynthesis -mmu00514 Other types of O-glycan biosynthesis -mmu00515 Mannose type O-glycan biosynthesis -mmu00520 Amino sugar and nucleotide sugar metabolism -mmu00524 Neomycin, kanamycin and gentamicin biosynthesis -mmu00531 Glycosaminoglycan degradation -mmu00532 Glycosaminoglycan biosynthesis -mmu00533 Glycosaminoglycan biosynthesis -mmu00534 Glycosaminoglycan biosynthesis -mmu00561 Glycerolipid metabolism -mmu00562 Inositol phosphate metabolism -mmu00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis -mmu00564 Glycerophospholipid metabolism -mmu00565 Ether lipid metabolism -mmu00590 Arachidonic acid metabolism -mmu00591 Linoleic acid metabolism -mmu00592 alpha-Linolenic acid metabolism -mmu00600 Sphingolipid metabolism -mmu00601 Glycosphingolipid biosynthesis -mmu00603 Glycosphingolipid biosynthesis -mmu00604 Glycosphingolipid biosynthesis -mmu00620 Pyruvate metabolism -mmu00630 Glyoxylate and dicarboxylate metabolism -mmu00640 Propanoate metabolism -mmu00650 Butanoate metabolism -mmu00670 One carbon pool by folate -mmu00730 Thiamine metabolism -mmu00740 Riboflavin metabolism -mmu00750 Vitamin B6 metabolism -mmu00760 Nicotinate and nicotinamide metabolism -mmu00770 Pantothenate and CoA biosynthesis -mmu00780 Biotin metabolism -mmu00785 Lipoic acid metabolism -mmu00790 Folate biosynthesis -mmu00830 Retinol metabolism -mmu00860 Porphyrin and chlorophyll metabolism -mmu00900 Terpenoid backbone biosynthesis -mmu00910 Nitrogen metabolism -mmu00920 Sulfur metabolism -mmu00970 Aminoacyl-tRNA biosynthesis -mmu00980 Metabolism of xenobiotics by cytochrome P450 -mmu00982 Drug metabolism -mmu00983 Drug metabolism -mmu01040 Biosynthesis of unsaturated fatty acids -mmu01100 Metabolic pathways -mmu01200 Carbon metabolism -mmu01210 2-Oxocarboxylic acid metabolism -mmu01212 Fatty acid metabolism -mmu01230 Biosynthesis of amino acids -mmu01521 EGFR tyrosine kinase inhibitor resistance -mmu01522 Endocrine resistance -mmu01523 Antifolate resistance -mmu01524 Platinum drug resistance -mmu02010 ABC transporters -mmu03008 Ribosome biogenesis in eukaryotes -mmu03010 Ribosome -mmu03013 RNA transport -mmu03015 mRNA surveillance pathway -mmu03018 RNA degradation -mmu03020 RNA polymerase -mmu03022 Basal transcription factors -mmu03030 DNA replication -mmu03040 Spliceosome -mmu03050 Proteasome -mmu03060 Protein export -mmu03320 PPAR signaling pathway -mmu03410 Base excision repair -mmu03420 Nucleotide excision repair -mmu03430 Mismatch repair -mmu03440 Homologous recombination -mmu03450 Non-homologous end-joining -mmu03460 Fanconi anemia pathway -mmu04010 MAPK signaling pathway -mmu04012 ErbB signaling pathway -mmu04014 Ras signaling pathway -mmu04015 Rap1 signaling pathway -mmu04020 Calcium signaling pathway -mmu04022 cGMP-PKG signaling pathway -mmu04024 cAMP signaling pathway -mmu04060 Cytokine-cytokine receptor interaction -mmu04062 Chemokine signaling pathway -mmu04064 NF-kappa B signaling pathway -mmu04066 HIF-1 signaling pathway -mmu04068 FoxO signaling pathway -mmu04070 Phosphatidylinositol signaling system -mmu04071 Sphingolipid signaling pathway -mmu04072 Phospholipase D signaling pathway -mmu04080 Neuroactive ligand-receptor interaction -mmu04110 Cell cycle -mmu04114 Oocyte meiosis -mmu04115 p53 signaling pathway -mmu04120 Ubiquitin mediated proteolysis -mmu04122 Sulfur relay system -mmu04130 SNARE interactions in vesicular transport -mmu04136 Autophagy -mmu04137 Mitophagy -mmu04140 Autophagy -mmu04141 Protein processing in endoplasmic reticulum -mmu04142 Lysosome -mmu04144 Endocytosis -mmu04145 Phagosome -mmu04146 Peroxisome -mmu04150 mTOR signaling pathway -mmu04151 PI3K-Akt signaling pathway -mmu04152 AMPK signaling pathway -mmu04210 Apoptosis -mmu04211 Longevity regulating pathway -mmu04213 Longevity regulating pathway -mmu04215 Apoptosis -mmu04216 Ferroptosis -mmu04217 Necroptosis -mmu04218 Cellular senescence -mmu04260 Cardiac muscle contraction -mmu04261 Adrenergic signaling in cardiomyocytes -mmu04270 Vascular smooth muscle contraction -mmu04310 Wnt signaling pathway -mmu04330 Notch signaling pathway -mmu04340 Hedgehog signaling pathway -mmu04350 TGF-beta signaling pathway -mmu04360 Axon guidance -mmu04370 VEGF signaling pathway -mmu04371 Apelin signaling pathway -mmu04380 Osteoclast differentiation -mmu04390 Hippo signaling pathway -mmu04392 Hippo signaling pathway -mmu04510 Focal adhesion -mmu04512 ECM-receptor interaction -mmu04514 Cell adhesion molecules (CAMs) -mmu04520 Adherens junction -mmu04530 Tight junction -mmu04540 Gap junction -mmu04550 Signaling pathways regulating pluripotency of stem cells -mmu04610 Complement and coagulation cascades -mmu04611 Platelet activation -mmu04612 Antigen processing and presentation -mmu04614 Renin-angiotensin system -mmu04620 Toll-like receptor signaling pathway -mmu04621 NOD-like receptor signaling pathway -mmu04622 RIG-I-like receptor signaling pathway -mmu04623 Cytosolic DNA-sensing pathway -mmu04625 C-type lectin receptor signaling pathway -mmu04630 Jak-STAT signaling pathway -mmu04640 Hematopoietic cell lineage -mmu04650 Natural killer cell mediated cytotoxicity -mmu04657 IL-17 signaling pathway -mmu04658 Th1 and Th2 cell differentiation -mmu04659 Th17 cell differentiation -mmu04660 T cell receptor signaling pathway -mmu04662 B cell receptor signaling pathway -mmu04664 Fc epsilon RI signaling pathway -mmu04666 Fc gamma R-mediated phagocytosis -mmu04668 TNF signaling pathway -mmu04670 Leukocyte transendothelial migration -mmu04672 Intestinal immune network for IgA production -mmu04710 Circadian rhythm -mmu04713 Circadian entrainment -mmu04714 Thermogenesis -mmu04720 Long-term potentiation -mmu04721 Synaptic vesicle cycle -mmu04722 Neurotrophin signaling pathway -mmu04723 Retrograde endocannabinoid signaling -mmu04724 Glutamatergic synapse -mmu04725 Cholinergic synapse -mmu04726 Serotonergic synapse -mmu04727 GABAergic synapse -mmu04728 Dopaminergic synapse -mmu04730 Long-term depression -mmu04740 Olfactory transduction -mmu04742 Taste transduction -mmu04744 Phototransduction -mmu04750 Inflammatory mediator regulation of TRP channels -mmu04810 Regulation of actin cytoskeleton -mmu04910 Insulin signaling pathway -mmu04911 Insulin secretion -mmu04912 GnRH signaling pathway -mmu04913 Ovarian steroidogenesis -mmu04914 Progesterone-mediated oocyte maturation -mmu04915 Estrogen signaling pathway -mmu04916 Melanogenesis -mmu04917 Prolactin signaling pathway -mmu04918 Thyroid hormone synthesis -mmu04919 Thyroid hormone signaling pathway -mmu04920 Adipocytokine signaling pathway -mmu04921 Oxytocin signaling pathway -mmu04922 Glucagon signaling pathway -mmu04923 Regulation of lipolysis in adipocytes -mmu04924 Renin secretion -mmu04925 Aldosterone synthesis and secretion -mmu04926 Relaxin signaling pathway -mmu04927 Cortisol synthesis and secretion -mmu04928 Parathyroid hormone synthesis, secretion and action -mmu04930 Type II diabetes mellitus -mmu04931 Insulin resistance -mmu04932 Non-alcoholic fatty liver disease (NAFLD) -mmu04933 AGE-RAGE signaling pathway in diabetic complications -mmu04934 Cushing's syndrome -mmu04940 Type I diabetes mellitus -mmu04950 Maturity onset diabetes of the young -mmu04960 Aldosterone-regulated sodium reabsorption -mmu04961 Endocrine and other factor-regulated calcium reabsorption -mmu04962 Vasopressin-regulated water reabsorption -mmu04964 Proximal tubule bicarbonate reclamation -mmu04966 Collecting duct acid secretion -mmu04970 Salivary secretion -mmu04971 Gastric acid secretion -mmu04972 Pancreatic secretion -mmu04973 Carbohydrate digestion and absorption -mmu04974 Protein digestion and absorption -mmu04975 Fat digestion and absorption -mmu04976 Bile secretion -mmu04977 Vitamin digestion and absorption -mmu04978 Mineral absorption -mmu04979 Cholesterol metabolism -mmu05010 Alzheimer's disease -mmu05012 Parkinson's disease -mmu05014 Amyotrophic lateral sclerosis (ALS) -mmu05016 Huntington's disease -mmu05020 Prion diseases -mmu05030 Cocaine addiction -mmu05031 Amphetamine addiction -mmu05032 Morphine addiction -mmu05033 Nicotine addiction -mmu05034 Alcoholism -mmu05100 Bacterial invasion of epithelial cells -mmu05132 Salmonella infection -mmu05133 Pertussis -mmu05134 Legionellosis -mmu05140 Leishmaniasis -mmu05142 Chagas disease (American trypanosomiasis) -mmu05143 African trypanosomiasis -mmu05144 Malaria -mmu05145 Toxoplasmosis -mmu05146 Amoebiasis -mmu05150 Staphylococcus aureus infection -mmu05152 Tuberculosis -mmu05160 Hepatitis C -mmu05161 Hepatitis B -mmu05162 Measles -mmu05163 Human cytomegalovirus infection -mmu05164 Influenza A -mmu05165 Human papillomavirus infection -mmu05166 HTLV-I infection -mmu05167 Kaposi's sarcoma-associated herpesvirus infection -mmu05168 Herpes simplex infection -mmu05169 Epstein-Barr virus infection -mmu05200 Pathways in cancer -mmu05202 Transcriptional misregulation in cancer -mmu05203 Viral carcinogenesis -mmu05204 Chemical carcinogenesis -mmu05205 Proteoglycans in cancer -mmu05206 MicroRNAs in cancer -mmu05210 Colorectal cancer -mmu05211 Renal cell carcinoma -mmu05212 Pancreatic cancer -mmu05213 Endometrial cancer -mmu05214 Glioma -mmu05215 Prostate cancer -mmu05216 Thyroid cancer -mmu05217 Basal cell carcinoma -mmu05218 Melanoma -mmu05219 Bladder cancer -mmu05220 Chronic myeloid leukemia -mmu05221 Acute myeloid leukemia -mmu05222 Small cell lung cancer -mmu05223 Non-small cell lung cancer -mmu05224 Breast cancer -mmu05225 Hepatocellular carcinoma -mmu05226 Gastric cancer -mmu05230 Central carbon metabolism in cancer -mmu05231 Choline metabolism in cancer -mmu05310 Asthma -mmu05320 Autoimmune thyroid disease -mmu05321 Inflammatory bowel disease (IBD) -mmu05322 Systemic lupus erythematosus -mmu05323 Rheumatoid arthritis -mmu05330 Allograft rejection -mmu05332 Graft-versus-host disease -mmu05340 Primary immunodeficiency -mmu05410 Hypertrophic cardiomyopathy (HCM) -mmu05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) -mmu05414 Dilated cardiomyopathy (DCM) -mmu05416 Viral myocarditis -mmu05418 Fluid shear stress and atherosclerosis
