Mercurial > repos > proteore > proteore_expression_rnaseq_abbased
changeset 14:778f7281ccba draft
"planemo upload commit 58e072579a4be282c00b54ebb88fbc59e189a7ed-dirty"
| author | proteore |
|---|---|
| date | Thu, 23 Jan 2020 11:10:19 +0000 |
| parents | 8ee4cfdc1a92 |
| children | 64681d9836e7 |
| files | add_expression_HPA.R add_expression_data.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/add_expression_HPA.R Thu Jan 23 11:02:34 2020 +0000 +++ b/add_expression_HPA.R Thu Jan 23 11:10:19 2020 +0000 @@ -158,7 +158,7 @@ args = get_args() #save(args,file="/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda") - #load("/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda") + load("/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda") inputtype = args$inputtype if (inputtype == "copypaste") { @@ -190,7 +190,7 @@ if (tail(unlist(strsplit(args$atlas,"/")),1) == "HPA_full_atlas_23-10-2018.tsv"){ options = convert_to_previous_header(options) } else { - options[which(options != 'TPM max in non-specific')] + options = options[which(options != 'TPM max in non-specific')] } res = add_expression(ids, protein_atlas, options)
--- a/add_expression_data.xml Thu Jan 23 11:02:34 2020 +0000 +++ b/add_expression_data.xml Thu Jan 23 11:10:19 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23.1"> +<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23.2"> <description> (RNAseq or Immuno-assays)[Human Protein Atlas] </description> <requirements>