# HG changeset patch
# User proteore
# Date 1579777819 0
# Node ID 778f7281ccba77754a0ff0ce152cee567fc540d6
# Parent  8ee4cfdc1a920d1f1f8ca190a57aabc05a54d620
"planemo upload commit 58e072579a4be282c00b54ebb88fbc59e189a7ed-dirty"

diff -r 8ee4cfdc1a92 -r 778f7281ccba add_expression_HPA.R
--- a/add_expression_HPA.R	Thu Jan 23 11:02:34 2020 +0000
+++ b/add_expression_HPA.R	Thu Jan 23 11:10:19 2020 +0000
@@ -158,7 +158,7 @@
   args = get_args()
 
   #save(args,file="/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda")
-  #load("/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda")
+  load("/home/dchristiany/proteore_project/ProteoRE/tools/add_expression_data_HPA/args.rda")
   
   inputtype = args$inputtype
   if (inputtype == "copypaste") {
@@ -190,7 +190,7 @@
   if (tail(unlist(strsplit(args$atlas,"/")),1) == "HPA_full_atlas_23-10-2018.tsv"){ 
       options = convert_to_previous_header(options)
   } else {
-      options[which(options != 'TPM max in non-specific')]
+      options = options[which(options != 'TPM max in non-specific')]
       }
   res = add_expression(ids, protein_atlas, options)
   
diff -r 8ee4cfdc1a92 -r 778f7281ccba add_expression_data.xml
--- a/add_expression_data.xml	Thu Jan 23 11:02:34 2020 +0000
+++ b/add_expression_data.xml	Thu Jan 23 11:10:19 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23.1">
+<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23.2">
 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
 </description>
 <requirements>