Mercurial > repos > proteore > proteore_expression_rnaseq_abbased
changeset 16:0ce8b8d2322f draft
"planemo upload commit 889d13f87b8ee67aabc4a773cd55cea7285fe08b-dirty"
| author | proteore |
|---|---|
| date | Fri, 24 Jan 2020 08:25:34 +0000 |
| parents | 64681d9836e7 |
| children | 5d21c5e70774 |
| files | add_expression_data.xml |
| diffstat | 1 files changed, 8 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/add_expression_data.xml Thu Jan 23 11:14:08 2020 +0000 +++ b/add_expression_data.xml Fri Jan 24 08:25:34 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23.3"> +<tool id="rna_abbased_data" name="Add expression data" version="2020.01.2'"> <description> (RNAseq or Immuno-assays)[Human Protein Atlas] </description> <requirements> @@ -137,7 +137,7 @@ - RNA tissue specificity abundance in 'Transcript Per Million': For each gene is reported the tissue specificity abundance in 'Transcript Per Million' (TPM) as the sum of the TPM values of all its protein-coding transcripts. -- RNA non-specific tissue abundance in 'Transcript Per Million': please refer to http://www.proteinatlas.org/about/assays+annotation#rna. +- RNA non-specific tissue abundance in 'Transcript Per Million' (only available from 23/10/2018 release): please refer to http://www.proteinatlas.org/about/assays+annotation#rna. ----- @@ -147,9 +147,13 @@ ----- -**Data sources (release date)** +**HPA source file version (release date)** + +Release date 23/10/2018: data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38 -HPA source file (data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38): http://www.proteinatlas.org/download/proteinatlas.tab.gz +Release date 21/01/2020: a subset of the data in the Human Protein Atlas version 19.1 + +downloaded from: http://www.proteinatlas.org/download/proteinatlas.tab.gz -----