Mercurial > repos > proteore > proteore_data_manager

changeset 32:ec1febc6672e draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 10:04:51 +0000
parents faeeabb11a4d
children e681d7de4f5e
files data_manager/resource_building.py data_manager/resource_building.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.py	Wed Jan 08 09:53:34 2020 +0000
+++ b/data_manager/resource_building.py	Wed Jan 08 10:04:51 2020 +0000
@@ -640,7 +640,7 @@
         #target_directory = "/projet/galaxydev/galaxy/tools/proteore/ProteoRE/tools/resources_building/test-data/"
         peptide_atlas = peptide_atlas.split(",")
         for pa_tissue in peptide_atlas:
-            peptide_atlas_sources(data_manager_dict, pa_tissue, date, target_directory, args.tool_data_path)
+            peptide_atlas_sources(data_manager_dict, pa_tissue, date, target_directory)
 
     ## Download ID_mapping source file from Uniprot
     try:
@@ -650,7 +650,7 @@
     if id_mapping is not None:
         id_mapping = id_mapping .split(",")
         for species in id_mapping :
-            id_mapping_sources(data_manager_dict, species, target_directory)
+            id_mapping_sources(data_manager_dict, species, target_directory, args.tool_data_path))
 
     ## Download PPI ref files from biogrid/bioplex/humap
     try:
--- a/data_manager/resource_building.xml	Wed Jan 08 09:53:34 2020 +0000
+++ b/data_manager/resource_building.xml	Wed Jan 08 10:04:51 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.1" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>