# HG changeset patch
# User proteore
# Date 1578477891 0
# Node ID ec1febc6672eb58747c90c4347de3788d5b3dad4
# Parent  faeeabb11a4dc396c09a6b32e425188fa059bc36
"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"

diff -r faeeabb11a4d -r ec1febc6672e data_manager/resource_building.py
--- a/data_manager/resource_building.py	Wed Jan 08 09:53:34 2020 +0000
+++ b/data_manager/resource_building.py	Wed Jan 08 10:04:51 2020 +0000
@@ -640,7 +640,7 @@
         #target_directory = "/projet/galaxydev/galaxy/tools/proteore/ProteoRE/tools/resources_building/test-data/"
         peptide_atlas = peptide_atlas.split(",")
         for pa_tissue in peptide_atlas:
-            peptide_atlas_sources(data_manager_dict, pa_tissue, date, target_directory, args.tool_data_path)
+            peptide_atlas_sources(data_manager_dict, pa_tissue, date, target_directory)
 
     ## Download ID_mapping source file from Uniprot
     try:
@@ -650,7 +650,7 @@
     if id_mapping is not None:
         id_mapping = id_mapping .split(",")
         for species in id_mapping :
-            id_mapping_sources(data_manager_dict, species, target_directory)
+            id_mapping_sources(data_manager_dict, species, target_directory, args.tool_data_path))
 
     ## Download PPI ref files from biogrid/bioplex/humap
     try:
diff -r faeeabb11a4d -r ec1febc6672e data_manager/resource_building.xml
--- a/data_manager/resource_building.xml	Wed Jan 08 09:53:34 2020 +0000
+++ b/data_manager/resource_building.xml	Wed Jan 08 10:04:51 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.1" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>