Mercurial > repos > proteore > proteore_data_manager
changeset 4:ce01295cd601 draft
planemo upload commit 51fc514a85c1055cab5bb6e76c90f3da7e648101-dirty
| author | proteore |
|---|---|
| date | Fri, 08 Mar 2019 04:03:51 -0500 |
| parents | 18d3b1ea7a18 |
| children | 429e7481c392 |
| files | data_manager/resource_building.py data_manager/resource_building.xml |
| diffstat | 2 files changed, 8 insertions(+), 1 deletions(-) [+] |
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--- a/data_manager/resource_building.py Wed Mar 06 09:50:27 2019 -0500 +++ b/data_manager/resource_building.py Fri Mar 08 04:03:51 2019 -0500 @@ -444,11 +444,18 @@ interactant_A, interactant_B = get_interactant_name(line,dico_geneid_to_gene_name) + #first interactant (first column) if line[0] not in dico_network: dico_network[line[0]]=[line[:2]+[interactant_A,interactant_B,line[2]]] else : dico_network[line[0]].append(line[:2]+[interactant_A,interactant_B,line[2]]) + #second interactant (second column) + if line[1] not in dico_network: + dico_network[line[1]]=[line[1]+line[0]+[interactant_B,interactant_A,line[2]]] + else : + dico_network[line[1]].append(line[1]+line[0]+[interactant_B,interactant_A,line[2]]) + with requests.Session() as s: r = s.get('https://www.reactome.org/download/current/NCBI2Reactome.txt') r.encoding ="utf-8"
--- a/data_manager/resource_building.xml Wed Mar 06 09:50:27 2019 -0500 +++ b/data_manager/resource_building.xml Fri Mar 08 04:03:51 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.03.06.2" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.03.08" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>