# HG changeset patch # User proteore # Date 1552035831 18000 # Node ID ce01295cd6018688a042de947f08f7dac4f0be90 # Parent 18d3b1ea7a18566201ab28ea29953f2da370d28f planemo upload commit 51fc514a85c1055cab5bb6e76c90f3da7e648101-dirty diff -r 18d3b1ea7a18 -r ce01295cd601 data_manager/resource_building.py --- a/data_manager/resource_building.py Wed Mar 06 09:50:27 2019 -0500 +++ b/data_manager/resource_building.py Fri Mar 08 04:03:51 2019 -0500 @@ -444,11 +444,18 @@ interactant_A, interactant_B = get_interactant_name(line,dico_geneid_to_gene_name) + #first interactant (first column) if line[0] not in dico_network: dico_network[line[0]]=[line[:2]+[interactant_A,interactant_B,line[2]]] else : dico_network[line[0]].append(line[:2]+[interactant_A,interactant_B,line[2]]) + #second interactant (second column) + if line[1] not in dico_network: + dico_network[line[1]]=[line[1]+line[0]+[interactant_B,interactant_A,line[2]]] + else : + dico_network[line[1]].append(line[1]+line[0]+[interactant_B,interactant_A,line[2]]) + with requests.Session() as s: r = s.get('https://www.reactome.org/download/current/NCBI2Reactome.txt') r.encoding ="utf-8" diff -r 18d3b1ea7a18 -r ce01295cd601 data_manager/resource_building.xml --- a/data_manager/resource_building.xml Wed Mar 06 09:50:27 2019 -0500 +++ b/data_manager/resource_building.xml Fri Mar 08 04:03:51 2019 -0500 @@ -1,4 +1,4 @@ - + to create or update reference files for proteore tools