Mercurial > repos > proteore > proteore_data_manager
changeset 36:b18cb0d11971 draft
"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
| author | proteore |
|---|---|
| date | Wed, 08 Jan 2020 10:34:07 +0000 |
| parents | 06103d45814d |
| children | 807ecb8c3867 |
| files | data_manager/resource_building.py data_manager/resource_building.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/resource_building.py Wed Jan 08 10:17:18 2020 +0000 +++ b/data_manager/resource_building.py Wed Jan 08 10:34:07 2020 +0000 @@ -136,7 +136,7 @@ human = species == "Human" species_dict = { "Human" : "HUMAN_9606", "Mouse" : "MOUSE_10090", "Rat" : "RAT_10116" } files=["idmapping_selected.tab.gz","idmapping.dat.gz"] - archive = os.path.join(tool_data_path, "ID_mapping_archive_"+species+"_"+str(time.strftime("%Y%m%d"))) + archive = os.path.join(tool_data_path, "id_mapping/ID_mapping_archive_"+species+"_"+str(time.strftime("%Y%m%d"))) if os.path.isfile is False : os.mkdir(archive) #header @@ -252,7 +252,8 @@ w = csv.writer(out,delimiter='\t') w.writerows(tab) - subprocess.call(['tar', '-zczf', archive+".tar.gz", archive]) + subprocess.call(['tar', '-czvf', archive+".tar.gz", archive]) + os.remove(archive) name_dict={"Human" : "Homo sapiens", "Mouse" : "Mus musculus", "Rat" : "Rattus norvegicus"} name = species +" (" + name_dict[species]+" "+time.strftime("%d/%m/%Y")+")"
--- a/data_manager/resource_building.xml Wed Jan 08 10:17:18 2020 +0000 +++ b/data_manager/resource_building.xml Wed Jan 08 10:34:07 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.4" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.5" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>