Mercurial > repos > proteore > proteore_data_manager
changeset 35:06103d45814d draft
"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
| author | proteore |
|---|---|
| date | Wed, 08 Jan 2020 10:17:18 +0000 |
| parents | 06b3181206b4 |
| children | b18cb0d11971 |
| files | data_manager/resource_building.py data_manager/resource_building.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/resource_building.py Wed Jan 08 10:13:01 2020 +0000 +++ b/data_manager/resource_building.py Wed Jan 08 10:17:18 2020 +0000 @@ -137,7 +137,7 @@ species_dict = { "Human" : "HUMAN_9606", "Mouse" : "MOUSE_10090", "Rat" : "RAT_10116" } files=["idmapping_selected.tab.gz","idmapping.dat.gz"] archive = os.path.join(tool_data_path, "ID_mapping_archive_"+species+"_"+str(time.strftime("%Y%m%d"))) - os.mkdir(archive) + if os.path.isfile is False : os.mkdir(archive) #header if human : tab = [["UniProt-AC","UniProt-AC_reviewed","UniProt-ID","GeneID","RefSeq","GI","PDB","GO","PIR","MIM","UniGene","Ensembl_Gene","Ensembl_Transcript","Ensembl_Protein","neXtProt","BioGrid","STRING","KEGG",'Gene_Name']]
--- a/data_manager/resource_building.xml Wed Jan 08 10:13:01 2020 +0000 +++ b/data_manager/resource_building.xml Wed Jan 08 10:17:18 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.3" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.4" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>