Mercurial > repos > proteore > proteore_data_manager

changeset 57:149eb9e80717 draft

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"planemo upload commit 625bba907f87307a7c954e1fa73438dd3b12fe34-dirty"
author proteore
date Tue, 09 Jun 2020 07:22:26 +0000
parents bd67848a789f
children 08fa2597b053
files data_manager/resource_building.py data_manager/resource_building.xml
diffstat 2 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.py	Tue Jun 09 06:59:35 2020 +0000
+++ b/data_manager/resource_building.py	Tue Jun 09 07:22:26 2020 +0000
@@ -569,8 +569,6 @@
             time.sleep(3600)
             resp = requests.get(url=query)
         data = resp.json()
-        resp = requests.get(url=query)
-        data = resp.json()
 
         #get info from json dictionary
         mass_mol = data["entry"]["isoforms"][0]["massAsString"]
--- a/data_manager/resource_building.xml	Tue Jun 09 06:59:35 2020 +0000
+++ b/data_manager/resource_building.xml	Tue Jun 09 07:22:26 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.06.09" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.06.09." tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
@@ -15,7 +15,7 @@
     #else if $database.database == "peptide_atlas"
         --peptideatlas="$database.tissues"
         --date="$database.date"
-    #else if $database.database == "id_mapping"
+    #else if $database.database == "id_mapping"1
         --id_mapping="$database.species"
     #else if $database.database == "PPI"
         --interactome="$database.base.interactome"