Mercurial > repos > proteore > proteore_clusterprofiler
changeset 41:3fd1ccc57a6a draft
planemo upload commit c9d70181a2b587e53dcc4b5885b74b625def6b8c-dirty
| author | proteore |
|---|---|
| date | Fri, 06 Dec 2019 08:27:03 +0000 |
| parents | 25222be4a88b |
| children | 3a990910e7f4 |
| files | GO-enrich.R cluster_profiler.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/GO-enrich.R Thu Dec 05 13:35:24 2019 +0000 +++ b/GO-enrich.R Fri Dec 06 08:27:03 2019 +0000 @@ -60,7 +60,7 @@ #width = width_by_max_char(nb_max_char) name <- paste("GGO_", ontology, "_bar-plot", sep = "") png(name,height = 720, width = 600) - p <- barplot(ggo, showCategory=10) + p <- barplot(ggo, showCategory=20) print(p) dev.off() ggo <- as.data.frame(ggo) @@ -90,7 +90,7 @@ if ("dotplot" %in% plot ){ dot_name <- paste("EGO_", ontology, "_dot-plot", sep = "") png(dot_name,height = 720, width = 600) - p <- dotplot(ego, showCategory=10) + p <- dotplot(ego, showCategory=20) print(p) dev.off() } @@ -98,7 +98,7 @@ if ("barplot" %in% plot ){ bar_name <- paste("EGO_", ontology, "_bar-plot", sep = "") png(bar_name,height = 720, width = 600) - p <- barplot(ego, showCategory=10) + p <- barplot(ego, showCategory=20) print(p) dev.off()
--- a/cluster_profiler.xml Thu Dec 05 13:35:24 2019 +0000 +++ b/cluster_profiler.xml Fri Dec 06 08:27:03 2019 +0000 @@ -1,4 +1,4 @@ -<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.12.05"> +<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.12.06"> <description>(Human, Mouse, Rat)[clusterProfiler]</description> <requirements> <requirement type="package">R</requirement>