Mercurial > repos > proteore > proteore_clusterprofiler

changeset 40:25222be4a88b draft

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planemo upload commit c9d70181a2b587e53dcc4b5885b74b625def6b8c-dirty
author proteore
date Thu, 05 Dec 2019 13:35:24 +0000
parents 3d4cdea0ea20
children 3fd1ccc57a6a
files GO-enrich.R cluster_profiler.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/GO-enrich.R	Thu Sep 26 08:59:40 2019 -0400
+++ b/GO-enrich.R	Thu Dec 05 13:35:24 2019 +0000
@@ -50,6 +50,9 @@
                ont=ontology, 
                level=level, 
                readable=TRUE)
+  
+  ggo@result<-ggo@result[order(-ggo@result$Count),]
+
 
   if (length(ggo@result$ID) > 0 ) {
     ggo@result$Description <- sapply(as.vector(ggo@result$Description), function(x) {ifelse(nchar(x)>50, substr(x,1,50),x)},USE.NAMES = FALSE)
--- a/cluster_profiler.xml	Thu Sep 26 08:59:40 2019 -0400
+++ b/cluster_profiler.xml	Thu Dec 05 13:35:24 2019 +0000
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.09.26">
+<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.12.05">
     <description>(Human, Mouse, Rat)[clusterProfiler]</description>
     <requirements>
         <requirement type="package">R</requirement>