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planemo upload commit a2f39c10087e77bde5b5db5d04305f72b8eb2af2
author pjbriggs
date Tue, 27 Jun 2023 07:37:07 +0000
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1 #!/bin/bash
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2 #
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3 # Install the tool dependencies for MACS21 for testing from command line
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4 #
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5 # Installer functions
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6 . $(dirname $0)/../../local_dependency_installers/numpy.sh
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7 . $(dirname $0)/../../local_dependency_installers/macs2.sh
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8 . $(dirname $0)/../../local_dependency_installers/ucsc_tools.sh
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9 #
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10 # Installation directory
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11 TOP_DIR=$1
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12 if [ -z "$TOP_DIR" ] ; then
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13 echo Usage: $(basename $0) DIR
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14 exit
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15 fi
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16 if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then
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17 TOP_DIR=$(pwd)/$TOP_DIR
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18 fi
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19 if [ ! -d "$TOP_DIR" ] ; then
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20 mkdir -p $TOP_DIR
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21 fi
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22 # Numpy 1.9
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23 install_numpy_1_9 $TOP_DIR
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24 # MACS21
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25 . $TOP_DIR/numpy/1.9/env.sh # needs Numpy 1.9
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26 install_macs2_2_1_0_20140616 $TOP_DIR
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27 # UCSC tool subset
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28 install_ucsc_tools_for_macs21_2_0 $TOP_DIR
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29 ##
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30 #