diff install_tool_deps.sh @ 23:c7646ff9b5c9 draft default tip

planemo upload commit a2f39c10087e77bde5b5db5d04305f72b8eb2af2
author pjbriggs
date Tue, 27 Jun 2023 07:37:07 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/install_tool_deps.sh	Tue Jun 27 07:37:07 2023 +0000
@@ -0,0 +1,30 @@
+#!/bin/bash
+#
+# Install the tool dependencies for MACS21 for testing from command line
+#
+# Installer functions
+. $(dirname $0)/../../local_dependency_installers/numpy.sh
+. $(dirname $0)/../../local_dependency_installers/macs2.sh
+. $(dirname $0)/../../local_dependency_installers/ucsc_tools.sh
+#
+# Installation directory
+TOP_DIR=$1
+if [ -z "$TOP_DIR" ] ; then
+    echo Usage: $(basename $0) DIR
+    exit
+fi
+if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then
+    TOP_DIR=$(pwd)/$TOP_DIR
+fi
+if [ ! -d "$TOP_DIR" ] ; then
+    mkdir -p $TOP_DIR
+fi
+# Numpy 1.9
+install_numpy_1_9 $TOP_DIR
+# MACS21
+. $TOP_DIR/numpy/1.9/env.sh # needs Numpy 1.9
+install_macs2_2_1_0_20140616 $TOP_DIR
+# UCSC tool subset
+install_ucsc_tools_for_macs21_2_0 $TOP_DIR
+##
+#