Mercurial > repos > pjbriggs > macs21
diff install_tool_deps.sh @ 23:c7646ff9b5c9 draft default tip
planemo upload commit a2f39c10087e77bde5b5db5d04305f72b8eb2af2
author | pjbriggs |
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date | Tue, 27 Jun 2023 07:37:07 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/install_tool_deps.sh Tue Jun 27 07:37:07 2023 +0000 @@ -0,0 +1,30 @@ +#!/bin/bash +# +# Install the tool dependencies for MACS21 for testing from command line +# +# Installer functions +. $(dirname $0)/../../local_dependency_installers/numpy.sh +. $(dirname $0)/../../local_dependency_installers/macs2.sh +. $(dirname $0)/../../local_dependency_installers/ucsc_tools.sh +# +# Installation directory +TOP_DIR=$1 +if [ -z "$TOP_DIR" ] ; then + echo Usage: $(basename $0) DIR + exit +fi +if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then + TOP_DIR=$(pwd)/$TOP_DIR +fi +if [ ! -d "$TOP_DIR" ] ; then + mkdir -p $TOP_DIR +fi +# Numpy 1.9 +install_numpy_1_9 $TOP_DIR +# MACS21 +. $TOP_DIR/numpy/1.9/env.sh # needs Numpy 1.9 +install_macs2_2_1_0_20140616 $TOP_DIR +# UCSC tool subset +install_ucsc_tools_for_macs21_2_0 $TOP_DIR +## +#