Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

view tool_dependencies.xml @ 35:44f5057fc878 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty
author pjbriggs
date Mon, 15 Oct 2018 10:51:22 -0400
parents 3512b135ecb0
children c9ed9443f293
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<?xml version="1.0"?>
<tool_dependency>
  <package name="amplicon_analysis_pipeline-all" version="1.2.3">
    <install version="1.0">
      <actions>
	<action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action>
	<!--
	<action type="chmod">
	  <file mode="755">./install_amplicon_analysis.sh</file>
	</action>
	-->
	<action type="shell_command">
	  bash ./install_amplicon_analysis.sh $INSTALL_DIR
	</action>
	<action type="set_environment">
	    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>
	</action>
      </actions>
    </install>
  </package>
</tool_dependency>