Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

diff tool_dependencies.xml @ 35:44f5057fc878 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty
author pjbriggs
date Mon, 15 Oct 2018 10:51:22 -0400
parents 3512b135ecb0
children c9ed9443f293
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--- a/tool_dependencies.xml	Mon Oct 15 10:40:41 2018 -0400
+++ b/tool_dependencies.xml	Mon Oct 15 10:51:22 2018 -0400
@@ -4,11 +4,13 @@
     <install version="1.0">
       <actions>
 	<action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action>
+	<!--
 	<action type="chmod">
 	  <file mode="755">./install_amplicon_analysis.sh</file>
 	</action>
+	-->
 	<action type="shell_command">
-	  ./install_amplicon_analysis.sh $INSTALL_DIR
+	  bash ./install_amplicon_analysis.sh $INSTALL_DIR
 	</action>
 	<action type="set_environment">
 	    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>