Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison tool_dependencies.xml @ 35:44f5057fc878 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty
author pjbriggs
date Mon, 15 Oct 2018 10:51:22 -0400
parents 3512b135ecb0
children c9ed9443f293
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34:3512b135ecb0 35:44f5057fc878
2 <tool_dependency> 2 <tool_dependency>
3 <package name="amplicon_analysis_pipeline-all" version="1.2.3"> 3 <package name="amplicon_analysis_pipeline-all" version="1.2.3">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action> 6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action>
7 <!--
7 <action type="chmod"> 8 <action type="chmod">
8 <file mode="755">./install_amplicon_analysis.sh</file> 9 <file mode="755">./install_amplicon_analysis.sh</file>
9 </action> 10 </action>
11 -->
10 <action type="shell_command"> 12 <action type="shell_command">
11 ./install_amplicon_analysis.sh $INSTALL_DIR 13 bash ./install_amplicon_analysis.sh $INSTALL_DIR
12 </action> 14 </action>
13 <action type="set_environment"> 15 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable> 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>
15 </action> 17 </action>
16 </actions> 18 </actions>