Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

diff data_manager/plasmidfinder_fetch_database.py @ 3:5ffc68b4ec04 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 5c04f6f49deca3735a752e5ac29027ba9d5ff000-dirty
author pimarin
date Fri, 17 Feb 2023 14:03:19 +0000 (2023-02-17)
parents bd56ac4cca16
children e05fd47bcca6
line wrap: on
line diff
--- a/data_manager/plasmidfinder_fetch_database.py	Fri Feb 17 08:04:44 2023 +0000
+++ b/data_manager/plasmidfinder_fetch_database.py	Fri Feb 17 14:03:19 2023 +0000
@@ -55,7 +55,7 @@
         data_info = dict(value=plasmidfinder_value,
                          name=plasmidfinder_name,
                          date=self._plasmidfinder_date_version,
-                         path="plasmidfinder_database")
+                         path=self._db_name)
         self.plasmidfinder_table_list["data_tables"][self.data_table_name] = [data_info]
         return self.plasmidfinder_table_list
 
@@ -209,3 +209,7 @@
 
 if __name__ == '__main__':
     main()
+
+plasmidfinder_download = DownloadPlasmidfinderDatabase()
+plasmidfinder_download.download_database()
+plasmidfinder_download.write_json_infos()
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