Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

comparison data_manager/plasmidfinder_fetch_database.py @ 3:5ffc68b4ec04 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 5c04f6f49deca3735a752e5ac29027ba9d5ff000-dirty
author pimarin
date Fri, 17 Feb 2023 14:03:19 +0000
parents bd56ac4cca16
children e05fd47bcca6
comparison
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2:bd56ac4cca16 3:5ffc68b4ec04
53 plasmidfinder_name = f"{version_value}" \ 53 plasmidfinder_name = f"{version_value}" \
54 f"_{self._plasmidfinder_date_version}" 54 f"_{self._plasmidfinder_date_version}"
55 data_info = dict(value=plasmidfinder_value, 55 data_info = dict(value=plasmidfinder_value,
56 name=plasmidfinder_name, 56 name=plasmidfinder_name,
57 date=self._plasmidfinder_date_version, 57 date=self._plasmidfinder_date_version,
58 path="plasmidfinder_database") 58 path=self._db_name)
59 self.plasmidfinder_table_list["data_tables"][self.data_table_name] = [data_info] 59 self.plasmidfinder_table_list["data_tables"][self.data_table_name] = [data_info]
60 return self.plasmidfinder_table_list 60 return self.plasmidfinder_table_list
61 61
62 62
63 class DownloadPlasmidfinderDatabase(GetPlasmidfinderDataManager): 63 class DownloadPlasmidfinderDatabase(GetPlasmidfinderDataManager):
207 plasmidfinder_download.write_json_infos() 207 plasmidfinder_download.write_json_infos()
208 208
209 209
210 if __name__ == '__main__': 210 if __name__ == '__main__':
211 main() 211 main()
212
213 plasmidfinder_download = DownloadPlasmidfinderDatabase()
214 plasmidfinder_download.download_database()
215 plasmidfinder_download.write_json_infos()