Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

annotate data_manager_conf.xml @ 6:4e933a39094f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 3b2a82fa2ba8408609a72fefd18571223f080a6d
author pimarin
date Wed, 23 Aug 2023 08:23:25 +0000
parents 60cfd33bc2fb
children ed0f59ab5e61
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8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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1 <data_managers>
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60cfd33bc2fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 0a3992c5be846fc9f18b7ca18f0adcd78f5b9396-dirty
pimarin
parents: 0
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2 <data_manager tool_file="data_manager/plasmidfinder_fetch_database.xml" id="plasmidfinder_fetch_database">
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8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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3 <data_table name="plasmidfinder_database">
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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4 <output>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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5 <column name="value" />
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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6 <column name="name" />
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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7 <column name="date" />
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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8 <column name="path" output_ref="output_file">
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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9 <move type="directory" relativize_symlinks="True">
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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10 <source>${path}</source>
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4e933a39094f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 3b2a82fa2ba8408609a72fefd18571223f080a6d
pimarin
parents: 5
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">plasmidfinder-db/${name}</target>
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8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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12 </move>
6
4e933a39094f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 3b2a82fa2ba8408609a72fefd18571223f080a6d
pimarin
parents: 5
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/plasmidfinder-db/${name}</value_translation>
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8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
diff changeset
14 <value_translation type="function">abspath</value_translation>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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15 </column>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
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16 </output>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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17 </data_table>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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18 </data_manager>
8ad77a9dc91d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f3383fdb9a17d1b69d05547cdb96534a5f762bec-dirty
pimarin
parents:
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19 </data_managers>