Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

comparison data_manager_conf.xml @ 6:4e933a39094f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 3b2a82fa2ba8408609a72fefd18571223f080a6d
author pimarin
date Wed, 23 Aug 2023 08:23:25 +0000
parents 60cfd33bc2fb
children ed0f59ab5e61
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5:60cfd33bc2fb 6:4e933a39094f
1 <?xml version="1.0"?>
2 <data_managers> 1 <data_managers>
3 <data_manager tool_file="data_manager/plasmidfinder_fetch_database.xml" id="plasmidfinder_fetch_database"> 2 <data_manager tool_file="data_manager/plasmidfinder_fetch_database.xml" id="plasmidfinder_fetch_database">
4 <data_table name="plasmidfinder_database"> 3 <data_table name="plasmidfinder_database">
5 <output> 4 <output>
6 <column name="value" /> 5 <column name="value" />
7 <column name="name" /> 6 <column name="name" />
8 <column name="date" /> 7 <column name="date" />
9 <column name="path" output_ref="output_file"> 8 <column name="path" output_ref="output_file">
10 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
11 <source>${path}</source> 10 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">plasmidfinder_database/${name}</target> 11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">plasmidfinder-db/${name}</target>
13 </move> 12 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/plasmidfinder_database/${name}</value_translation> 13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/plasmidfinder-db/${name}</value_translation>
15 <value_translation type="function">abspath</value_translation> 14 <value_translation type="function">abspath</value_translation>
16 </column> 15 </column>
17 </output> 16 </output>
18 </data_table> 17 </data_table>
19 </data_manager> 18 </data_manager>