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comparison test-data/quast/quast_result.tsv @ 0:a157d29ef11d draft default tip

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planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author pimarin
date Mon, 15 May 2023 14:20:18 +0000
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-1:000000000000 0:a157d29ef11d
1 Assembly 10_Enterococcus_faecalis_S17_L001
2 # contigs (>= 0 bp) 100
3 # contigs (>= 1000 bp) 58
4 # contigs (>= 5000 bp) 48
5 # contigs (>= 10000 bp) 41
6 # contigs (>= 25000 bp) 28
7 # contigs (>= 50000 bp) 20
8 Total length (>= 0 bp) 3027634
9 Total length (>= 1000 bp) 3015201
10 Total length (>= 5000 bp) 2996428
11 Total length (>= 10000 bp) 2944723
12 Total length (>= 25000 bp) 2735277
13 Total length (>= 50000 bp) 2421445
14 # contigs 62
15 Largest contig 436224
16 Total length 3017519
17 GC (%) 37.31
18 N50 99915
19 N90 27780
20 auN 154096.4
21 L50 8
22 L90 28
23 # total reads 3489582
24 # left 1744791
25 # right 1744791
26 Mapped (%) 99.85
27 Properly paired (%) 98.83
28 Avg. coverage depth 230
29 Coverage >= 1x (%) 100.0
30 # N's per 100 kbp 0.00