Mercurial > repos > pimarin > abromicsextractor
comparison test-data/quast/quast_result.tsv @ 0:a157d29ef11d draft default tip
planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author | pimarin |
---|---|
date | Mon, 15 May 2023 14:20:18 +0000 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:a157d29ef11d |
---|---|
1 Assembly 10_Enterococcus_faecalis_S17_L001 | |
2 # contigs (>= 0 bp) 100 | |
3 # contigs (>= 1000 bp) 58 | |
4 # contigs (>= 5000 bp) 48 | |
5 # contigs (>= 10000 bp) 41 | |
6 # contigs (>= 25000 bp) 28 | |
7 # contigs (>= 50000 bp) 20 | |
8 Total length (>= 0 bp) 3027634 | |
9 Total length (>= 1000 bp) 3015201 | |
10 Total length (>= 5000 bp) 2996428 | |
11 Total length (>= 10000 bp) 2944723 | |
12 Total length (>= 25000 bp) 2735277 | |
13 Total length (>= 50000 bp) 2421445 | |
14 # contigs 62 | |
15 Largest contig 436224 | |
16 Total length 3017519 | |
17 GC (%) 37.31 | |
18 N50 99915 | |
19 N90 27780 | |
20 auN 154096.4 | |
21 L50 8 | |
22 L90 28 | |
23 # total reads 3489582 | |
24 # left 1744791 | |
25 # right 1744791 | |
26 Mapped (%) 99.85 | |
27 Properly paired (%) 98.83 | |
28 Avg. coverage depth 230 | |
29 Coverage >= 1x (%) 100.0 | |
30 # N's per 100 kbp 0.00 |