Mercurial > repos > peterjc > ncbi_blast_plus
annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 32:b2795652d2b4 draft
Uploaded v0.0.22a, more macros, $GALAXY_SLOTS, more descriptive output names, test makeblastdb
| author | peterjc |
|---|---|
| date | Mon, 25 Nov 2013 10:58:46 -0500 |
| parents | 5ec998a3530c |
| children | 5402f9b0d508 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 3 | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
| 0 | 3 <BlastOutput> |
| 4 <BlastOutput_program>blastx</BlastOutput_program> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
5 <BlastOutput_version>BLASTX 2.2.27+</BlastOutput_version> |
| 0 | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
| 7 <BlastOutput_db></BlastOutput_db> | |
| 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
| 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> | |
| 10 <BlastOutput_query-len>1047</BlastOutput_query-len> | |
| 11 <BlastOutput_param> | |
| 12 <Parameters> | |
| 13 <Parameters_matrix>BLOSUM62</Parameters_matrix> | |
| 14 <Parameters_expect>1e-10</Parameters_expect> | |
| 15 <Parameters_gap-open>11</Parameters_gap-open> | |
| 16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
| 17 <Parameters_filter>L;</Parameters_filter> | |
| 18 </Parameters> | |
| 19 </BlastOutput_param> | |
| 20 <BlastOutput_iterations> | |
| 21 <Iteration> | |
| 22 <Iteration_iter-num>1</Iteration_iter-num> | |
| 23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 25 <Iteration_query-len>1047</Iteration_query-len> | |
| 26 <Iteration_hits></Iteration_hits> | |
| 27 <Iteration_stat> | |
| 28 <Statistics> | |
| 29 <Statistics_db-num>0</Statistics_db-num> | |
| 30 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
31 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
32 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 33 <Statistics_kappa>0.041</Statistics_kappa> |
| 34 <Statistics_lambda>0.267</Statistics_lambda> | |
| 35 <Statistics_entropy>0.14</Statistics_entropy> | |
| 36 </Statistics> | |
| 37 </Iteration_stat> | |
| 38 <Iteration_message>No hits found</Iteration_message> | |
| 39 </Iteration> | |
| 40 <Iteration> | |
| 41 <Iteration_iter-num>2</Iteration_iter-num> | |
| 42 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 43 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 44 <Iteration_query-len>1047</Iteration_query-len> | |
| 45 <Iteration_hits></Iteration_hits> | |
| 46 <Iteration_stat> | |
| 47 <Statistics> | |
| 48 <Statistics_db-num>0</Statistics_db-num> | |
| 49 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
50 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
51 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 52 <Statistics_kappa>0.041</Statistics_kappa> |
| 53 <Statistics_lambda>0.267</Statistics_lambda> | |
| 54 <Statistics_entropy>0.14</Statistics_entropy> | |
| 55 </Statistics> | |
| 56 </Iteration_stat> | |
| 57 <Iteration_message>No hits found</Iteration_message> | |
| 58 </Iteration> | |
| 59 <Iteration> | |
| 60 <Iteration_iter-num>3</Iteration_iter-num> | |
| 61 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 62 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 63 <Iteration_query-len>1047</Iteration_query-len> | |
| 64 <Iteration_hits></Iteration_hits> | |
| 65 <Iteration_stat> | |
| 66 <Statistics> | |
| 67 <Statistics_db-num>0</Statistics_db-num> | |
| 68 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
69 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
70 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 71 <Statistics_kappa>0.041</Statistics_kappa> |
| 72 <Statistics_lambda>0.267</Statistics_lambda> | |
| 73 <Statistics_entropy>0.14</Statistics_entropy> | |
| 74 </Statistics> | |
| 75 </Iteration_stat> | |
| 76 <Iteration_message>No hits found</Iteration_message> | |
| 77 </Iteration> | |
| 78 <Iteration> | |
| 79 <Iteration_iter-num>4</Iteration_iter-num> | |
| 80 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
| 81 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> | |
| 82 <Iteration_query-len>1047</Iteration_query-len> | |
| 83 <Iteration_hits> | |
| 84 <Hit> | |
| 85 <Hit_num>1</Hit_num> | |
| 86 <Hit_id>Subject_4</Hit_id> | |
| 87 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 88 <Hit_accession>Subject_4</Hit_accession> | |
| 89 <Hit_len>348</Hit_len> | |
| 90 <Hit_hsps> | |
| 91 <Hsp> | |
| 92 <Hsp_num>1</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
93 <Hsp_bit-score>639.032</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
94 <Hsp_score>1647</Hsp_score> |
| 0 | 95 <Hsp_evalue>0</Hsp_evalue> |
| 96 <Hsp_query-from>1</Hsp_query-from> | |
| 97 <Hsp_query-to>1044</Hsp_query-to> | |
| 98 <Hsp_hit-from>1</Hsp_hit-from> | |
| 99 <Hsp_hit-to>348</Hsp_hit-to> | |
| 100 <Hsp_query-frame>1</Hsp_query-frame> | |
| 101 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 102 <Hsp_identity>336</Hsp_identity> | |
| 103 <Hsp_positive>343</Hsp_positive> | |
| 104 <Hsp_gaps>0</Hsp_gaps> | |
| 105 <Hsp_align-len>348</Hsp_align-len> | |
| 106 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> | |
| 107 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
| 108 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
| 109 </Hsp> | |
| 110 </Hit_hsps> | |
| 111 </Hit> | |
| 112 </Iteration_hits> | |
| 113 <Iteration_stat> | |
| 114 <Statistics> | |
| 115 <Statistics_db-num>0</Statistics_db-num> | |
| 116 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
117 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
118 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 119 <Statistics_kappa>0.041</Statistics_kappa> |
| 120 <Statistics_lambda>0.267</Statistics_lambda> | |
| 121 <Statistics_entropy>0.14</Statistics_entropy> | |
| 122 </Statistics> | |
| 123 </Iteration_stat> | |
| 124 </Iteration> | |
| 125 <Iteration> | |
| 126 <Iteration_iter-num>5</Iteration_iter-num> | |
| 127 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 128 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 129 <Iteration_query-len>1574</Iteration_query-len> | |
| 130 <Iteration_hits></Iteration_hits> | |
| 131 <Iteration_stat> | |
| 132 <Statistics> | |
| 133 <Statistics_db-num>0</Statistics_db-num> | |
| 134 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
135 <Statistics_hsp-len>33</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
136 <Statistics_eff-space>183143</Statistics_eff-space> |
| 0 | 137 <Statistics_kappa>0.041</Statistics_kappa> |
| 138 <Statistics_lambda>0.267</Statistics_lambda> | |
| 139 <Statistics_entropy>0.14</Statistics_entropy> | |
| 140 </Statistics> | |
| 141 </Iteration_stat> | |
| 142 <Iteration_message>No hits found</Iteration_message> | |
| 143 </Iteration> | |
| 144 <Iteration> | |
| 145 <Iteration_iter-num>6</Iteration_iter-num> | |
| 146 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 147 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 148 <Iteration_query-len>1574</Iteration_query-len> | |
| 149 <Iteration_hits></Iteration_hits> | |
| 150 <Iteration_stat> | |
| 151 <Statistics> | |
| 152 <Statistics_db-num>0</Statistics_db-num> | |
| 153 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
154 <Statistics_hsp-len>33</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
155 <Statistics_eff-space>183143</Statistics_eff-space> |
| 0 | 156 <Statistics_kappa>0.041</Statistics_kappa> |
| 157 <Statistics_lambda>0.267</Statistics_lambda> | |
| 158 <Statistics_entropy>0.14</Statistics_entropy> | |
| 159 </Statistics> | |
| 160 </Iteration_stat> | |
| 161 <Iteration_message>No hits found</Iteration_message> | |
| 162 </Iteration> | |
| 163 <Iteration> | |
| 164 <Iteration_iter-num>7</Iteration_iter-num> | |
| 165 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 166 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 167 <Iteration_query-len>1574</Iteration_query-len> | |
| 168 <Iteration_hits></Iteration_hits> | |
| 169 <Iteration_stat> | |
| 170 <Statistics> | |
| 171 <Statistics_db-num>0</Statistics_db-num> | |
| 172 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
173 <Statistics_hsp-len>33</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
174 <Statistics_eff-space>183143</Statistics_eff-space> |
| 0 | 175 <Statistics_kappa>0.041</Statistics_kappa> |
| 176 <Statistics_lambda>0.267</Statistics_lambda> | |
| 177 <Statistics_entropy>0.14</Statistics_entropy> | |
| 178 </Statistics> | |
| 179 </Iteration_stat> | |
| 180 <Iteration_message>No hits found</Iteration_message> | |
| 181 </Iteration> | |
| 182 <Iteration> | |
| 183 <Iteration_iter-num>8</Iteration_iter-num> | |
| 184 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
| 185 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> | |
| 186 <Iteration_query-len>1574</Iteration_query-len> | |
| 187 <Iteration_hits> | |
| 188 <Hit> | |
| 189 <Hit_num>1</Hit_num> | |
| 190 <Hit_id>Subject_4</Hit_id> | |
| 191 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 192 <Hit_accession>Subject_4</Hit_accession> | |
| 193 <Hit_len>348</Hit_len> | |
| 194 <Hit_hsps> | |
| 195 <Hsp> | |
| 196 <Hsp_num>1</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
197 <Hsp_bit-score>551.206</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
198 <Hsp_score>1419</Hsp_score> |
| 3 | 199 <Hsp_evalue>0</Hsp_evalue> |
| 0 | 200 <Hsp_query-from>42</Hsp_query-from> |
| 201 <Hsp_query-to>1037</Hsp_query-to> | |
| 202 <Hsp_hit-from>1</Hsp_hit-from> | |
| 203 <Hsp_hit-to>332</Hsp_hit-to> | |
| 204 <Hsp_query-frame>3</Hsp_query-frame> | |
| 205 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 206 <Hsp_identity>283</Hsp_identity> | |
| 207 <Hsp_positive>315</Hsp_positive> | |
| 208 <Hsp_gaps>0</Hsp_gaps> | |
| 209 <Hsp_align-len>332</Hsp_align-len> | |
| 210 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> | |
| 211 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> | |
| 212 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> | |
| 213 </Hsp> | |
| 214 </Hit_hsps> | |
| 215 </Hit> | |
| 216 </Iteration_hits> | |
| 217 <Iteration_stat> | |
| 218 <Statistics> | |
| 219 <Statistics_db-num>0</Statistics_db-num> | |
| 220 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
221 <Statistics_hsp-len>33</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
222 <Statistics_eff-space>183143</Statistics_eff-space> |
| 0 | 223 <Statistics_kappa>0.041</Statistics_kappa> |
| 224 <Statistics_lambda>0.267</Statistics_lambda> | |
| 225 <Statistics_entropy>0.14</Statistics_entropy> | |
| 226 </Statistics> | |
| 227 </Iteration_stat> | |
| 228 </Iteration> | |
| 229 <Iteration> | |
| 230 <Iteration_iter-num>9</Iteration_iter-num> | |
| 231 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 232 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 233 <Iteration_query-len>4301</Iteration_query-len> | |
| 234 <Iteration_hits></Iteration_hits> | |
| 235 <Iteration_stat> | |
| 236 <Statistics> | |
| 237 <Statistics_db-num>0</Statistics_db-num> | |
| 238 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
239 <Statistics_hsp-len>40</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
240 <Statistics_eff-space>509838</Statistics_eff-space> |
| 0 | 241 <Statistics_kappa>0.041</Statistics_kappa> |
| 242 <Statistics_lambda>0.267</Statistics_lambda> | |
| 243 <Statistics_entropy>0.14</Statistics_entropy> | |
| 244 </Statistics> | |
| 245 </Iteration_stat> | |
| 246 <Iteration_message>No hits found</Iteration_message> | |
| 247 </Iteration> | |
| 248 <Iteration> | |
| 249 <Iteration_iter-num>10</Iteration_iter-num> | |
| 250 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 251 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 252 <Iteration_query-len>4301</Iteration_query-len> | |
| 253 <Iteration_hits></Iteration_hits> | |
| 254 <Iteration_stat> | |
| 255 <Statistics> | |
| 256 <Statistics_db-num>0</Statistics_db-num> | |
| 257 <Statistics_db-len>0</Statistics_db-len> | |
|
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258 <Statistics_hsp-len>40</Statistics_hsp-len> |
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259 <Statistics_eff-space>509838</Statistics_eff-space> |
| 0 | 260 <Statistics_kappa>0.041</Statistics_kappa> |
| 261 <Statistics_lambda>0.267</Statistics_lambda> | |
| 262 <Statistics_entropy>0.14</Statistics_entropy> | |
| 263 </Statistics> | |
| 264 </Iteration_stat> | |
| 265 <Iteration_message>No hits found</Iteration_message> | |
| 266 </Iteration> | |
| 267 <Iteration> | |
| 268 <Iteration_iter-num>11</Iteration_iter-num> | |
| 269 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 270 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 271 <Iteration_query-len>4301</Iteration_query-len> | |
| 272 <Iteration_hits></Iteration_hits> | |
| 273 <Iteration_stat> | |
| 274 <Statistics> | |
| 275 <Statistics_db-num>0</Statistics_db-num> | |
| 276 <Statistics_db-len>0</Statistics_db-len> | |
|
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277 <Statistics_hsp-len>40</Statistics_hsp-len> |
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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278 <Statistics_eff-space>509838</Statistics_eff-space> |
| 0 | 279 <Statistics_kappa>0.041</Statistics_kappa> |
| 280 <Statistics_lambda>0.267</Statistics_lambda> | |
| 281 <Statistics_entropy>0.14</Statistics_entropy> | |
| 282 </Statistics> | |
| 283 </Iteration_stat> | |
| 284 <Iteration_message>No hits found</Iteration_message> | |
| 285 </Iteration> | |
| 286 <Iteration> | |
| 287 <Iteration_iter-num>12</Iteration_iter-num> | |
| 288 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
| 289 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> | |
| 290 <Iteration_query-len>4301</Iteration_query-len> | |
| 291 <Iteration_hits> | |
| 292 <Hit> | |
| 293 <Hit_num>1</Hit_num> | |
| 294 <Hit_id>Subject_4</Hit_id> | |
| 295 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 296 <Hit_accession>Subject_4</Hit_accession> | |
| 297 <Hit_len>348</Hit_len> | |
| 298 <Hit_hsps> | |
| 299 <Hsp> | |
| 300 <Hsp_num>1</Hsp_num> | |
|
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301 <Hsp_bit-score>220.32</Hsp_bit-score> |
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302 <Hsp_score>560</Hsp_score> |
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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303 <Hsp_evalue>4.29169e-67</Hsp_evalue> |
| 0 | 304 <Hsp_query-from>1</Hsp_query-from> |
| 305 <Hsp_query-to>333</Hsp_query-to> | |
| 306 <Hsp_hit-from>11</Hsp_hit-from> | |
| 307 <Hsp_hit-to>121</Hsp_hit-to> | |
| 308 <Hsp_query-frame>1</Hsp_query-frame> | |
| 309 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 310 <Hsp_identity>107</Hsp_identity> | |
| 311 <Hsp_positive>109</Hsp_positive> | |
| 312 <Hsp_gaps>0</Hsp_gaps> | |
| 313 <Hsp_align-len>111</Hsp_align-len> | |
| 314 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> | |
| 315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | |
| 316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | |
| 317 </Hsp> | |
| 318 <Hsp> | |
| 319 <Hsp_num>2</Hsp_num> | |
|
30
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320 <Hsp_bit-score>127.487</Hsp_bit-score> |
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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321 <Hsp_score>319</Hsp_score> |
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5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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322 <Hsp_evalue>1.95079e-35</Hsp_evalue> |
| 0 | 323 <Hsp_query-from>3174</Hsp_query-from> |
| 324 <Hsp_query-to>3368</Hsp_query-to> | |
| 325 <Hsp_hit-from>248</Hsp_hit-from> | |
| 326 <Hsp_hit-to>312</Hsp_hit-to> | |
| 327 <Hsp_query-frame>3</Hsp_query-frame> | |
| 328 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 329 <Hsp_identity>60</Hsp_identity> | |
| 330 <Hsp_positive>64</Hsp_positive> | |
| 331 <Hsp_gaps>0</Hsp_gaps> | |
| 332 <Hsp_align-len>65</Hsp_align-len> | |
| 333 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> | |
| 334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> | |
| 335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | |
| 336 </Hsp> | |
| 337 <Hsp> | |
| 338 <Hsp_num>3</Hsp_num> | |
|
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339 <Hsp_bit-score>121.324</Hsp_bit-score> |
|
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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340 <Hsp_score>303</Hsp_score> |
|
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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341 <Hsp_evalue>1.96633e-33</Hsp_evalue> |
| 0 | 342 <Hsp_query-from>2855</Hsp_query-from> |
|
30
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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343 <Hsp_query-to>3031</Hsp_query-to> |
| 0 | 344 <Hsp_hit-from>177</Hsp_hit-from> |
|
30
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345 <Hsp_hit-to>235</Hsp_hit-to> |
| 0 | 346 <Hsp_query-frame>2</Hsp_query-frame> |
| 347 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 348 <Hsp_identity>54</Hsp_identity> | |
|
30
5ec998a3530c
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349 <Hsp_positive>57</Hsp_positive> |
| 0 | 350 <Hsp_gaps>0</Hsp_gaps> |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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351 <Hsp_align-len>59</Hsp_align-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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352 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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353 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
354 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> |
| 0 | 355 </Hsp> |
| 356 <Hsp> | |
| 357 <Hsp_num>4</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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358 <Hsp_bit-score>97.0561</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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359 <Hsp_score>240</Hsp_score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
360 <Hsp_evalue>1.16473e-25</Hsp_evalue> |
| 0 | 361 <Hsp_query-from>1404</Hsp_query-from> |
| 362 <Hsp_query-to>1580</Hsp_query-to> | |
| 363 <Hsp_hit-from>119</Hsp_hit-from> | |
| 364 <Hsp_hit-to>177</Hsp_hit-to> | |
| 365 <Hsp_query-frame>3</Hsp_query-frame> | |
| 366 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 367 <Hsp_identity>55</Hsp_identity> | |
| 368 <Hsp_positive>56</Hsp_positive> | |
| 369 <Hsp_gaps>0</Hsp_gaps> | |
| 370 <Hsp_align-len>59</Hsp_align-len> | |
| 371 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> | |
| 372 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> | |
| 373 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | |
| 374 </Hsp> | |
| 375 <Hsp> | |
| 376 <Hsp_num>5</Hsp_num> | |
|
30
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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377 <Hsp_bit-score>56.9954</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
378 <Hsp_score>136</Hsp_score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
379 <Hsp_evalue>1.23645e-12</Hsp_evalue> |
| 0 | 380 <Hsp_query-from>4222</Hsp_query-from> |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
381 <Hsp_query-to>4299</Hsp_query-to> |
| 0 | 382 <Hsp_hit-from>312</Hsp_hit-from> |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
383 <Hsp_hit-to>337</Hsp_hit-to> |
| 0 | 384 <Hsp_query-frame>1</Hsp_query-frame> |
| 385 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 386 <Hsp_identity>23</Hsp_identity> | |
| 387 <Hsp_positive>24</Hsp_positive> | |
| 388 <Hsp_gaps>0</Hsp_gaps> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
389 <Hsp_align-len>26</Hsp_align-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
390 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
391 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
392 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> |
| 0 | 393 </Hsp> |
| 394 </Hit_hsps> | |
| 395 </Hit> | |
| 396 </Iteration_hits> | |
| 397 <Iteration_stat> | |
| 398 <Statistics> | |
| 399 <Statistics_db-num>0</Statistics_db-num> | |
| 400 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
401 <Statistics_hsp-len>40</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
402 <Statistics_eff-space>509838</Statistics_eff-space> |
| 0 | 403 <Statistics_kappa>0.041</Statistics_kappa> |
| 404 <Statistics_lambda>0.267</Statistics_lambda> | |
| 405 <Statistics_entropy>0.14</Statistics_entropy> | |
| 406 </Statistics> | |
| 407 </Iteration_stat> | |
| 408 </Iteration> | |
| 409 <Iteration> | |
| 410 <Iteration_iter-num>13</Iteration_iter-num> | |
| 411 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 412 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 413 <Iteration_query-len>983</Iteration_query-len> | |
| 414 <Iteration_hits></Iteration_hits> | |
| 415 <Iteration_stat> | |
| 416 <Statistics> | |
| 417 <Statistics_db-num>0</Statistics_db-num> | |
| 418 <Statistics_db-len>0</Statistics_db-len> | |
|
30
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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419 <Statistics_hsp-len>29</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
420 <Statistics_eff-space>112346</Statistics_eff-space> |
| 0 | 421 <Statistics_kappa>0.041</Statistics_kappa> |
| 422 <Statistics_lambda>0.267</Statistics_lambda> | |
| 423 <Statistics_entropy>0.14</Statistics_entropy> | |
| 424 </Statistics> | |
| 425 </Iteration_stat> | |
| 426 <Iteration_message>No hits found</Iteration_message> | |
| 427 </Iteration> | |
| 428 <Iteration> | |
| 429 <Iteration_iter-num>14</Iteration_iter-num> | |
| 430 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 431 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 432 <Iteration_query-len>983</Iteration_query-len> | |
| 433 <Iteration_hits></Iteration_hits> | |
| 434 <Iteration_stat> | |
| 435 <Statistics> | |
| 436 <Statistics_db-num>0</Statistics_db-num> | |
| 437 <Statistics_db-len>0</Statistics_db-len> | |
|
30
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Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
438 <Statistics_hsp-len>29</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
439 <Statistics_eff-space>112346</Statistics_eff-space> |
| 0 | 440 <Statistics_kappa>0.041</Statistics_kappa> |
| 441 <Statistics_lambda>0.267</Statistics_lambda> | |
| 442 <Statistics_entropy>0.14</Statistics_entropy> | |
| 443 </Statistics> | |
| 444 </Iteration_stat> | |
| 445 <Iteration_message>No hits found</Iteration_message> | |
| 446 </Iteration> | |
| 447 <Iteration> | |
| 448 <Iteration_iter-num>15</Iteration_iter-num> | |
| 449 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 450 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 451 <Iteration_query-len>983</Iteration_query-len> | |
| 452 <Iteration_hits></Iteration_hits> | |
| 453 <Iteration_stat> | |
| 454 <Statistics> | |
| 455 <Statistics_db-num>0</Statistics_db-num> | |
| 456 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
457 <Statistics_hsp-len>29</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
458 <Statistics_eff-space>112346</Statistics_eff-space> |
| 0 | 459 <Statistics_kappa>0.041</Statistics_kappa> |
| 460 <Statistics_lambda>0.267</Statistics_lambda> | |
| 461 <Statistics_entropy>0.14</Statistics_entropy> | |
| 462 </Statistics> | |
| 463 </Iteration_stat> | |
| 464 <Iteration_message>No hits found</Iteration_message> | |
| 465 </Iteration> | |
| 466 <Iteration> | |
| 467 <Iteration_iter-num>16</Iteration_iter-num> | |
| 468 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
| 469 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> | |
| 470 <Iteration_query-len>983</Iteration_query-len> | |
| 471 <Iteration_hits> | |
| 472 <Hit> | |
| 473 <Hit_num>1</Hit_num> | |
| 474 <Hit_id>Subject_4</Hit_id> | |
| 475 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 476 <Hit_accession>Subject_4</Hit_accession> | |
| 477 <Hit_len>348</Hit_len> | |
| 478 <Hit_hsps> | |
| 479 <Hsp> | |
| 480 <Hsp_num>1</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
481 <Hsp_bit-score>589.341</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
482 <Hsp_score>1518</Hsp_score> |
| 3 | 483 <Hsp_evalue>0</Hsp_evalue> |
| 0 | 484 <Hsp_query-from>1</Hsp_query-from> |
| 485 <Hsp_query-to>978</Hsp_query-to> | |
| 486 <Hsp_hit-from>11</Hsp_hit-from> | |
| 487 <Hsp_hit-to>336</Hsp_hit-to> | |
| 488 <Hsp_query-frame>1</Hsp_query-frame> | |
| 489 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 490 <Hsp_identity>310</Hsp_identity> | |
| 491 <Hsp_positive>322</Hsp_positive> | |
| 492 <Hsp_gaps>0</Hsp_gaps> | |
| 493 <Hsp_align-len>326</Hsp_align-len> | |
| 494 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> | |
| 495 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> | |
| 496 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
| 497 </Hsp> | |
| 498 </Hit_hsps> | |
| 499 </Hit> | |
| 500 </Iteration_hits> | |
| 501 <Iteration_stat> | |
| 502 <Statistics> | |
| 503 <Statistics_db-num>0</Statistics_db-num> | |
| 504 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
505 <Statistics_hsp-len>29</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
506 <Statistics_eff-space>112346</Statistics_eff-space> |
| 0 | 507 <Statistics_kappa>0.041</Statistics_kappa> |
| 508 <Statistics_lambda>0.267</Statistics_lambda> | |
| 509 <Statistics_entropy>0.14</Statistics_entropy> | |
| 510 </Statistics> | |
| 511 </Iteration_stat> | |
| 512 </Iteration> | |
| 513 <Iteration> | |
| 514 <Iteration_iter-num>17</Iteration_iter-num> | |
| 515 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 516 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 517 <Iteration_query-len>1047</Iteration_query-len> | |
| 518 <Iteration_hits></Iteration_hits> | |
| 519 <Iteration_stat> | |
| 520 <Statistics> | |
| 521 <Statistics_db-num>0</Statistics_db-num> | |
| 522 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
523 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
524 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 525 <Statistics_kappa>0.041</Statistics_kappa> |
| 526 <Statistics_lambda>0.267</Statistics_lambda> | |
| 527 <Statistics_entropy>0.14</Statistics_entropy> | |
| 528 </Statistics> | |
| 529 </Iteration_stat> | |
| 530 <Iteration_message>No hits found</Iteration_message> | |
| 531 </Iteration> | |
| 532 <Iteration> | |
| 533 <Iteration_iter-num>18</Iteration_iter-num> | |
| 534 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 535 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 536 <Iteration_query-len>1047</Iteration_query-len> | |
| 537 <Iteration_hits></Iteration_hits> | |
| 538 <Iteration_stat> | |
| 539 <Statistics> | |
| 540 <Statistics_db-num>0</Statistics_db-num> | |
| 541 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
542 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
543 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 544 <Statistics_kappa>0.041</Statistics_kappa> |
| 545 <Statistics_lambda>0.267</Statistics_lambda> | |
| 546 <Statistics_entropy>0.14</Statistics_entropy> | |
| 547 </Statistics> | |
| 548 </Iteration_stat> | |
| 549 <Iteration_message>No hits found</Iteration_message> | |
| 550 </Iteration> | |
| 551 <Iteration> | |
| 552 <Iteration_iter-num>19</Iteration_iter-num> | |
| 553 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 554 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 555 <Iteration_query-len>1047</Iteration_query-len> | |
| 556 <Iteration_hits></Iteration_hits> | |
| 557 <Iteration_stat> | |
| 558 <Statistics> | |
| 559 <Statistics_db-num>0</Statistics_db-num> | |
| 560 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
561 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
562 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 563 <Statistics_kappa>0.041</Statistics_kappa> |
| 564 <Statistics_lambda>0.267</Statistics_lambda> | |
| 565 <Statistics_entropy>0.14</Statistics_entropy> | |
| 566 </Statistics> | |
| 567 </Iteration_stat> | |
| 568 <Iteration_message>No hits found</Iteration_message> | |
| 569 </Iteration> | |
| 570 <Iteration> | |
| 571 <Iteration_iter-num>20</Iteration_iter-num> | |
| 572 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
| 573 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> | |
| 574 <Iteration_query-len>1047</Iteration_query-len> | |
| 575 <Iteration_hits> | |
| 576 <Hit> | |
| 577 <Hit_num>1</Hit_num> | |
| 578 <Hit_id>Subject_4</Hit_id> | |
| 579 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 580 <Hit_accession>Subject_4</Hit_accession> | |
| 581 <Hit_len>348</Hit_len> | |
| 582 <Hit_hsps> | |
| 583 <Hsp> | |
| 584 <Hsp_num>1</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
585 <Hsp_bit-score>619.387</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
586 <Hsp_score>1596</Hsp_score> |
| 0 | 587 <Hsp_evalue>0</Hsp_evalue> |
| 588 <Hsp_query-from>1</Hsp_query-from> | |
| 589 <Hsp_query-to>1044</Hsp_query-to> | |
| 590 <Hsp_hit-from>1</Hsp_hit-from> | |
| 591 <Hsp_hit-to>348</Hsp_hit-to> | |
| 592 <Hsp_query-frame>1</Hsp_query-frame> | |
| 593 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 594 <Hsp_identity>325</Hsp_identity> | |
| 595 <Hsp_positive>337</Hsp_positive> | |
| 596 <Hsp_gaps>0</Hsp_gaps> | |
| 597 <Hsp_align-len>348</Hsp_align-len> | |
| 598 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> | |
| 599 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> | |
| 600 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
| 601 </Hsp> | |
| 602 </Hit_hsps> | |
| 603 </Hit> | |
| 604 </Iteration_hits> | |
| 605 <Iteration_stat> | |
| 606 <Statistics> | |
| 607 <Statistics_db-num>0</Statistics_db-num> | |
| 608 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
609 <Statistics_hsp-len>30</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
610 <Statistics_eff-space>119944</Statistics_eff-space> |
| 0 | 611 <Statistics_kappa>0.041</Statistics_kappa> |
| 612 <Statistics_lambda>0.267</Statistics_lambda> | |
| 613 <Statistics_entropy>0.14</Statistics_entropy> | |
| 614 </Statistics> | |
| 615 </Iteration_stat> | |
| 616 </Iteration> | |
| 617 <Iteration> | |
| 618 <Iteration_iter-num>21</Iteration_iter-num> | |
| 619 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 620 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 621 <Iteration_query-len>1344</Iteration_query-len> | |
| 622 <Iteration_hits></Iteration_hits> | |
| 623 <Iteration_stat> | |
| 624 <Statistics> | |
| 625 <Statistics_db-num>0</Statistics_db-num> | |
| 626 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
627 <Statistics_hsp-len>32</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
628 <Statistics_eff-space>155584</Statistics_eff-space> |
| 0 | 629 <Statistics_kappa>0.041</Statistics_kappa> |
| 630 <Statistics_lambda>0.267</Statistics_lambda> | |
| 631 <Statistics_entropy>0.14</Statistics_entropy> | |
| 632 </Statistics> | |
| 633 </Iteration_stat> | |
| 634 <Iteration_message>No hits found</Iteration_message> | |
| 635 </Iteration> | |
| 636 <Iteration> | |
| 637 <Iteration_iter-num>22</Iteration_iter-num> | |
| 638 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 639 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 640 <Iteration_query-len>1344</Iteration_query-len> | |
| 641 <Iteration_hits></Iteration_hits> | |
| 642 <Iteration_stat> | |
| 643 <Statistics> | |
| 644 <Statistics_db-num>0</Statistics_db-num> | |
| 645 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
646 <Statistics_hsp-len>32</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
647 <Statistics_eff-space>155584</Statistics_eff-space> |
| 0 | 648 <Statistics_kappa>0.041</Statistics_kappa> |
| 649 <Statistics_lambda>0.267</Statistics_lambda> | |
| 650 <Statistics_entropy>0.14</Statistics_entropy> | |
| 651 </Statistics> | |
| 652 </Iteration_stat> | |
| 653 <Iteration_message>No hits found</Iteration_message> | |
| 654 </Iteration> | |
| 655 <Iteration> | |
| 656 <Iteration_iter-num>23</Iteration_iter-num> | |
| 657 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 658 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 659 <Iteration_query-len>1344</Iteration_query-len> | |
| 660 <Iteration_hits></Iteration_hits> | |
| 661 <Iteration_stat> | |
| 662 <Statistics> | |
| 663 <Statistics_db-num>0</Statistics_db-num> | |
| 664 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
665 <Statistics_hsp-len>32</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
666 <Statistics_eff-space>155584</Statistics_eff-space> |
| 0 | 667 <Statistics_kappa>0.041</Statistics_kappa> |
| 668 <Statistics_lambda>0.267</Statistics_lambda> | |
| 669 <Statistics_entropy>0.14</Statistics_entropy> | |
| 670 </Statistics> | |
| 671 </Iteration_stat> | |
| 672 <Iteration_message>No hits found</Iteration_message> | |
| 673 </Iteration> | |
| 674 <Iteration> | |
| 675 <Iteration_iter-num>24</Iteration_iter-num> | |
| 676 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
| 677 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> | |
| 678 <Iteration_query-len>1344</Iteration_query-len> | |
| 679 <Iteration_hits> | |
| 680 <Hit> | |
| 681 <Hit_num>1</Hit_num> | |
| 682 <Hit_id>Subject_4</Hit_id> | |
| 683 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> | |
| 684 <Hit_accession>Subject_4</Hit_accession> | |
| 685 <Hit_len>348</Hit_len> | |
| 686 <Hit_hsps> | |
| 687 <Hsp> | |
| 688 <Hsp_num>1</Hsp_num> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
689 <Hsp_bit-score>532.717</Hsp_bit-score> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
690 <Hsp_score>1371</Hsp_score> |
| 3 | 691 <Hsp_evalue>0</Hsp_evalue> |
| 0 | 692 <Hsp_query-from>23</Hsp_query-from> |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
693 <Hsp_query-to>1021</Hsp_query-to> |
| 0 | 694 <Hsp_hit-from>1</Hsp_hit-from> |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
695 <Hsp_hit-to>333</Hsp_hit-to> |
| 0 | 696 <Hsp_query-frame>2</Hsp_query-frame> |
| 697 <Hsp_hit-frame>0</Hsp_hit-frame> | |
| 698 <Hsp_identity>272</Hsp_identity> | |
| 699 <Hsp_positive>307</Hsp_positive> | |
| 700 <Hsp_gaps>0</Hsp_gaps> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
701 <Hsp_align-len>333</Hsp_align-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
702 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
703 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> |
| 0 | 705 </Hsp> |
| 706 </Hit_hsps> | |
| 707 </Hit> | |
| 708 </Iteration_hits> | |
| 709 <Iteration_stat> | |
| 710 <Statistics> | |
| 711 <Statistics_db-num>0</Statistics_db-num> | |
| 712 <Statistics_db-len>0</Statistics_db-len> | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
713 <Statistics_hsp-len>32</Statistics_hsp-len> |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
714 <Statistics_eff-space>155584</Statistics_eff-space> |
| 0 | 715 <Statistics_kappa>0.041</Statistics_kappa> |
| 716 <Statistics_lambda>0.267</Statistics_lambda> | |
| 717 <Statistics_entropy>0.14</Statistics_entropy> | |
| 718 </Statistics> | |
| 719 </Iteration_stat> | |
| 720 </Iteration> | |
| 721 </BlastOutput_iterations> | |
| 3 | 722 </BlastOutput> |