Mercurial > repos > p.lucas > megablast_tab_get_taxid_acc

changeset 1:6fa61da8c4c9 draft

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Uploaded
author p.lucas
date Fri, 04 Feb 2022 10:08:23 +0000
parents c5e214c34bfc
children aa830f48a018
files MEGABLAST_TAB_get_taxid_acc.xml
diffstat 1 files changed, 19 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MEGABLAST_TAB_get_taxid_acc.xml	Fri Feb 04 10:08:23 2022 +0000
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+<tool id="MEGABLAST_TAB_get_taxid_acc" name="Get taxid and acc from megablast" version="0">
+  <description>
+    From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in, 
+    provide 1 file with 2 columns: taxids accfrom taxonomic profile
+  </description>
+  <requirements>
+    <requirement type="package" version="2.7">python</requirement>
+    <requirement type="package">krona</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    python MEGABLAST_TAB_get_taxid_acc.py -r ${input} -o ${output}
+  ]]></command>
+  <inputs>
+    <param format="tsv" name="input" type="data" label="Select your megablast file."/>
+  </inputs> 
+  <outputs>
+    <data name="output" format="tsv" />
+  </outputs>
+