# HG changeset patch
# User p.lucas
# Date 1643969303 0
# Node ID 6fa61da8c4c931f0e3b7195b046b9b8db4135295
# Parent  c5e214c34bfc57e66393fa2dacac2ee4cdd971d0
Uploaded

diff -r c5e214c34bfc -r 6fa61da8c4c9 MEGABLAST_TAB_get_taxid_acc.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MEGABLAST_TAB_get_taxid_acc.xml	Fri Feb 04 10:08:23 2022 +0000
@@ -0,0 +1,19 @@
+<tool id="MEGABLAST_TAB_get_taxid_acc" name="Get taxid and acc from megablast" version="0">
+  <description>
+    From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in, 
+    provide 1 file with 2 columns: taxids accfrom taxonomic profile
+  </description>
+  <requirements>
+    <requirement type="package" version="2.7">python</requirement>
+    <requirement type="package">krona</requirement>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    python MEGABLAST_TAB_get_taxid_acc.py -r ${input} -o ${output}
+  ]]></command>
+  <inputs>
+    <param format="tsv" name="input" type="data" label="Select your megablast file."/>
+  </inputs> 
+  <outputs>
+    <data name="output" format="tsv" />
+  </outputs>
+