Mercurial > repos > p.lucas > megablast_tab_get_taxid_acc

changeset 4:5d8b5b9d39cc draft

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Fix command error
author p.lucas
date Fri, 04 Feb 2022 14:08:10 +0000
parents 1d60a7d0085a
children 7b55dec91dd1
files MEGABLAST_TAB_get_taxid_acc.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/MEGABLAST_TAB_get_taxid_acc.xml	Fri Feb 04 13:57:45 2022 +0000
+++ b/MEGABLAST_TAB_get_taxid_acc.xml	Fri Feb 04 14:08:10 2022 +0000
@@ -8,7 +8,7 @@
     <requirement type="package">krona</requirement>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
-    python MEGABLAST_TAB_get_taxid_acc.py -r ${input} -o ${output}
+    python2 '$__tool_directory__/MEGABLAST_TAB_get_taxid_acc.py' -r '$input' -o '$output'
   ]]></command>
   <inputs>
     <param format="tsv,tabular" name="input" type="data" label="Select your megablast file."/>