<tool id="MEGABLAST_TAB_get_taxid_acc" name="Get taxid and acc from megablast" version="1">
  <description>
    From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in, 
    provide 1 file with 2 columns: taxids accfrom taxonomic profile
  </description>
  <requirements>
    <requirement type="package" version="2.7">python</requirement>
    <requirement type="package">krona</requirement>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
    python2 '$__tool_directory__/MEGABLAST_TAB_get_taxid_acc.py' -r '$input' -o '$output'
  ]]></command>
  <inputs>
    <param format="tsv,tabular" name="input" type="data" label="Select your megablast file."/>
  </inputs> 
  <outputs>
    <data name="output" format="tsv" />
  </outputs>
  <help>
  From a megablast file of results (tabular 25 columns) and taxid(s) user is interested in,
  provide 1 file with 2 columns: taxids acc
  </help>
</tool>