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annotate macros.xml @ 0:0c888a0686bb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
author mvdbeek
date Thu, 29 Dec 2016 14:51:49 -0500
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0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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1 <?xml version="1.0"?>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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2 <macros>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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3 <xml name="index_parameter">
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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4 <param argument="-H" name="maxHitsIndex" type="integer" value="65525" min="1" max="65525" label="maxHits" help="K-mers that appear > maxHits times in the genome will be randomly sampled down to max-hits locations. To take advantage of k-mer sampling, use the same value of maxHits during index creation and alignment."/>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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5 <param argument="-L" name="wordLenIndex" type="integer" value="15" min="1" max="15" label="wordLen" help="the size of k-mers used for seed hits"/>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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6 <param argument="-S" name="skipDistanceIndex" type="integer" value="1" min="1" max="15" label="Skip-distance" help="the distance to skip ahead in the genome before forming the next k-mer to index. Skip-distance must be between 1 and wordLen (inclusive)">
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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7 </param>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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8 </xml>
0c888a0686bb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
mvdbeek
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9 </macros>