Mercurial > repos > mvdbeek > yaha

diff macros.xml @ 0:0c888a0686bb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/yaha commit 15b31d03f0dbc59ec544d4ce5837ff03b6936c27-dirty
author mvdbeek
date Thu, 29 Dec 2016 14:51:49 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Thu Dec 29 14:51:49 2016 -0500
@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="index_parameter">
+        <param argument="-H" name="maxHitsIndex" type="integer" value="65525" min="1" max="65525" label="maxHits" help="K-mers that appear > maxHits times in the genome will be randomly sampled down to max-hits locations. To take advantage of k-mer sampling, use the same value of maxHits during index creation and alignment."/>
+        <param argument="-L" name="wordLenIndex" type="integer" value="15" min="1" max="15" label="wordLen" help="the size of k-mers used for seed hits"/>
+        <param argument="-S" name="skipDistanceIndex" type="integer" value="1" min="1" max="15" label="Skip-distance" help="the distance to skip ahead in the genome before forming the next k-mer to index. Skip-distance must be between 1 and wordLen (inclusive)">
+        </param>
+    </xml>
+</macros>