Mercurial > repos > mvdbeek > package_ngs_1_1_3

comparison tool_dependencies.xml @ 5:0fe07850acd0 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 10:13:30 -0400
parents 35f562227199
children b2c6f4a8dce2
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4:35f562227199 5:0fe07850acd0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!-- <package name="ncbi_vdb" version="2.5.2"> 3 <!-- <package name="ncbi_vdb" version="2.5.2">
4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" /> 4 <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
5 </package>
6 -->
7 <package name="perl" version="5.18.1">
8 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 9 </package>
6 -->
7 <package name="ngs" version="1.1.3"> 10 <package name="ngs" version="1.1.3">
8 <install version="1.0"> 11 <install version="1.0">
9 <actions> 12 <actions>
10 <package name="perl" version="5.18.1"> 13 <action type="setup_perl_environment">
11 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 14 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 </package> 15 <package name="perl" version="5.18.1" />
13 <action type="setup_perl_environment"> 16 </repository>
14 <repository changeset_revision="f19b96171787" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 17 <package>File::Copy</package>
15 <package name="perl" version="5.18.1" /> 18 <package>File::Spec</package>
16 </repository> 19 <package>File::Copy::Recursive</package>
17 <package>File::Copy</package> 20 </action>
18 <package>File::Spec</package>
19 <package>File::Copy::Recursive</package>
20 </action>
21 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action> 21 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
22 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> 22 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
23 <action type="set_environment"> 23 <action type="set_environment">
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 </action> 25 </action>
26 </actions> 26 </actions>
27 </install> 27 </install>
28 <readme> 28 <readme>
29 ncbi-ngs, required for sra-tools package. 29 ncbi-ngs, required for sra-tools package.
30 30
31 </readme> 31 </readme>
32 </package> 32 </package>
33 </tool_dependency> 33 </tool_dependency>