view tool_dependencies.xml @ 6:b2c6f4a8dce2 draft default tip

planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Sat, 15 Aug 2015 11:02:36 -0400
parents 0fe07850acd0
children
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<?xml version="1.0"?>
<tool_dependency>
    <!--    <package name="ncbi_vdb" version="2.5.2">
            <repository name="package_ncbi_vdb_2_5_2" owner="mvdbeek" prior_installation_required="True" />
        </package>
    -->
    <package name="perl" version="5.18.1">
        <repository changeset_revision="4d932b1a336b" name="package_perl_5_18_test_sed" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ngs" version="1.1.3">
        <install version="1.0">
            <actions>
                <action type="setup_perl_environment">
                    <repository changeset_revision="4d932b1a336b" name="package_perl_5_18_test_sed" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="perl" version="5.18.1" />
                    </repository>
                    <package>File::Copy</package>
                    <package>File::Spec</package>
                    <package>File::Copy::Recursive</package>
                </action>
                <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
                <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            ncbi-ngs, required for sra-tools package.

        </readme>
    </package>
</tool_dependency>