Mercurial > repos > mvdbeek > add_input_name_as_column

annotate add_input_name_as_column.xml @ 1:07d2cbf43b51 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/add_input_name_as_column commit db90fc6943b99322a6d7459f644a6624c69a0be5-dirty
author mvdbeek
date Wed, 06 Mar 2019 09:15:49 -0500
parents bfebefdd5ba4
children ea4ad41e01fc
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07d2cbf43b51 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/add_input_name_as_column commit db90fc6943b99322a6d7459f644a6624c69a0be5-dirty
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1 <tool id="addName" name="Add input name as column" version="0.1.2" profile="17.09">
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2 <description>to an existing tabular file</description>
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3 <requirements>
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4 <requirement type="package" version="3.7">python</requirement>
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5 </requirements>
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6 <command><![CDATA[
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7 python '$__tool_directory__/'add_input_name_as_column.py
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8 --input '$input'
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9 --label '$input.element_identifier'
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10 --output '$output'
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11 #if $header.contains_header=="yes":
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12 --header "$header.colname"
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13 #end if
07d2cbf43b51 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/add_input_name_as_column commit db90fc6943b99322a6d7459f644a6624c69a0be5-dirty
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14 ]]></command>
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15 <inputs>
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16 <param format="txt" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
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17 <conditional name="header">
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18 <param name="contains_header" type="select" label="input contains a header line?" >
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19 <option value="yes" selected="true">Yes</option>
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20 <option value="no">No</option>
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21 </param>
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22 <when value="yes">
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23 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line">
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24 <validator type="empty_field" message="please add a column header"/>
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25 </param>
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26 </when>
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27 <when value="no">
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28 </when>
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29 </conditional>
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30 </inputs>
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31 <outputs>
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32 <data name="output" format="tabular" />
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33 </outputs>
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34 <tests>
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35 <test>
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36 <param name="input" value="signature.tab" ftype="tabular" />
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37 <param name="contains_header" value="yes" />
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38 <param name="colname" value="sample" />
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39 <output name="output" file="signature_with_header.tab" ftype="tabular"/>
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40 </test>
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41 <test>
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42 <param name="input" value="signature.tab" ftype="tabular" />
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43 <param name="contains_header" value="no" />
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44 <output name="output" file="signature_without_header.tab" ftype="tabular"/>
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45 </test>
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46 </tests>
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47 <help>
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48
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49 .. class:: infomark
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50
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51 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
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52
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53 -----
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54
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55 **What it does**
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56
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57 Adds a new column with the name of the input file as it appears in the history.
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58 Written by Marius van den Beek, m.vandenbeek at gmail dot com
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59 </help>
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60 </tool>
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