Mercurial > repos > mvdbeek > add_input_name_as_column

comparison add_input_name_as_column.xml @ 1:07d2cbf43b51 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/add_input_name_as_column commit db90fc6943b99322a6d7459f644a6624c69a0be5-dirty
author mvdbeek
date Wed, 06 Mar 2019 09:15:49 -0500
parents bfebefdd5ba4
children ea4ad41e01fc
comparison
equal deleted inserted replaced
0:bfebefdd5ba4 1:07d2cbf43b51
1 <tool id="addName" name="Add input name as column" version="0.1"> 1 <tool id="addName" name="Add input name as column" version="0.1.2" profile="17.09">
2 <description>to an existing tabular file</description> 2 <description>to an existing tabular file</description>
3 <command interpreter="python">add_input_name_as_column.py 3 <requirements>
4 --input "$input" 4 <requirement type="package" version="3.7">python</requirement>
5 --label "$input.name" 5 </requirements>
6 --output "$output" 6 <command><![CDATA[
7 #if $header.contains_header=="yes": 7 python '$__tool_directory__/'add_input_name_as_column.py
8 --header "$header.colname" 8 --input '$input'
9 #end if 9 --label '$input.element_identifier'
10 </command> 10 --output '$output'
11 #if $header.contains_header=="yes":
12 --header "$header.colname"
13 #end if
14 ]]></command>
11 <inputs> 15 <inputs>
12 <param format="tabular" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" /> 16 <param format="txt" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" />
13 <conditional name="header"> 17 <conditional name="header">
14 <param name="contains_header" type="select" label="input contains a header line?" > 18 <param name="contains_header" type="select" label="input contains a header line?" >
15 <option value="yes" selected="true">Yes</option> 19 <option value="yes" selected="true">Yes</option>
16 <option value="no">No</option> 20 <option value="no">No</option>
17 </param> 21 </param>
18 <when value="yes"> 22 <when value="yes">
19 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line"> 23 <param name="colname" type="text" value="sample" help="select a column header to be added in the first line">
20 <validator type="empty_field" message="please add a column header"/> 24 <validator type="empty_field" message="please add a column header"/>
21 </param> 25 </param>
22 </when> 26 </when>
23 <when value="no"> 27 <when value="no">
24 </when> 28 </when>
25 </conditional> 29 </conditional>
26 </inputs> 30 </inputs>
27 <outputs> 31 <outputs>
28 <data name="output" format="tabular" /> 32 <data name="output" format="tabular" />
49 ----- 53 -----
50 54
51 **What it does** 55 **What it does**
52 56
53 Adds a new column with the name of the input file as it appears in the history. 57 Adds a new column with the name of the input file as it appears in the history.
54 Written by Marius van den Beek, m.vandenbeek at gmail . com 58 Written by Marius van den Beek, m.vandenbeek at gmail dot com
55 </help> 59 </help>
56 </tool> 60 </tool>
57 61