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annotate ChessAnalysisPipeline.egg-info/PKG-INFO @ 0:cbbe42422d56 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
author kls286
date Tue, 28 Mar 2023 15:07:30 +0000
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cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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1 Metadata-Version: 2.1
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2 Name: ChessAnalysisPipeline
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3 Version: 0.0.1
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4 Summary: CHESS analysis pipeline framework
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5 Home-page: https://github.com/CHESSComputing/ChessAnalysisPipeline
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6 Author: Keara Soloway, Rolf Verberg, Valentin Kuznetsov
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7 Author-email:
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8 Classifier: Programming Language :: Python :: 3
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9 Classifier: License :: OSI Approved :: MIT License
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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10 Classifier: Operating System :: OS Independent
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11 Requires-Python: >=3.8
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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12 Description-Content-Type: text/markdown
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13 License-File: LICENSE
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14
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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15 ### Pipeline
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16 This package conains proof of concepts pipeline framework for workflow
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17 execution. It requires proper configuration of pipeline in terms classes, e.g.
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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18 ```
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19 # pipeline deifinition as sequence of objects
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20 pipeline:
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21 - reader.Reader
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22 - processor.Processor
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23 - fitter.Fitter
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24 - processor.Processor
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25 - writer.Writer
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26 - fitter.Fitter
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27 - writer.Writer
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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28
cbbe42422d56 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
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29 # specific object parameters, e.g. our reader accepts fileName=data.csv
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30 reader.Reader:
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31 fileName: data.csv
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32
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34 # specific object parameters, e.g. our writer accepts fileName=data.out
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35 writer.Writer:
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36 fileName: data.out
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37 ```
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38
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39 Then, you may execute this pipeline as following:
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40 ```
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41 ./runner.py --config config.yaml
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42 ```
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43 and, check the output in `data.out` file.
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