Mercurial > repos > kls286 > chap_test_20230328
comparison ChessAnalysisPipeline.egg-info/PKG-INFO @ 0:cbbe42422d56 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 1401a7e1ae007a6bda260d147f9b879e789b73e0-dirty
| author | kls286 |
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| date | Tue, 28 Mar 2023 15:07:30 +0000 |
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| 1 Metadata-Version: 2.1 | |
| 2 Name: ChessAnalysisPipeline | |
| 3 Version: 0.0.1 | |
| 4 Summary: CHESS analysis pipeline framework | |
| 5 Home-page: https://github.com/CHESSComputing/ChessAnalysisPipeline | |
| 6 Author: Keara Soloway, Rolf Verberg, Valentin Kuznetsov | |
| 7 Author-email: | |
| 8 Classifier: Programming Language :: Python :: 3 | |
| 9 Classifier: License :: OSI Approved :: MIT License | |
| 10 Classifier: Operating System :: OS Independent | |
| 11 Requires-Python: >=3.8 | |
| 12 Description-Content-Type: text/markdown | |
| 13 License-File: LICENSE | |
| 14 | |
| 15 ### Pipeline | |
| 16 This package conains proof of concepts pipeline framework for workflow | |
| 17 execution. It requires proper configuration of pipeline in terms classes, e.g. | |
| 18 ``` | |
| 19 # pipeline deifinition as sequence of objects | |
| 20 pipeline: | |
| 21 - reader.Reader | |
| 22 - processor.Processor | |
| 23 - fitter.Fitter | |
| 24 - processor.Processor | |
| 25 - writer.Writer | |
| 26 - fitter.Fitter | |
| 27 - writer.Writer | |
| 28 | |
| 29 # specific object parameters, e.g. our reader accepts fileName=data.csv | |
| 30 reader.Reader: | |
| 31 fileName: data.csv | |
| 32 | |
| 33 | |
| 34 # specific object parameters, e.g. our writer accepts fileName=data.out | |
| 35 writer.Writer: | |
| 36 fileName: data.out | |
| 37 ``` | |
| 38 | |
| 39 Then, you may execute this pipeline as following: | |
| 40 ``` | |
| 41 ./runner.py --config config.yaml | |
| 42 ``` | |
| 43 and, check the output in `data.out` file. | |
| 44 |