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annotate chap.xml @ 14:bca70009506d draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline/tree/galaxy commit 2d65c72740d0439b8385378a890b3763d717f152-dirty
author kls286
date Wed, 29 Mar 2023 18:26:46 +0000
parents 455e0b0bf8d4
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1 <tool id="chap" name="CHESS Analysis Pipeline" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05">
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2 <requirements>
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3 <requirement type="package" version="0.0.2">chessanalysispipeline</requirement>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 cp '$input' data.csv &&
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7 CHAP --config '$config'
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8 ]]></command>
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9 <inputs>
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10 <param type="data" name="config" format="yaml" />
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11 <param type="data" name="input" format="csv" />
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12 </inputs>
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13 <outputs>
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14 <data name="output" format="csv" from_work_dir="data.out"/>
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="config" value="config.yaml"/>
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19 <param name="input" value="data.csv"/>
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20 <output name="output" value="data.out"/>
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21 </test>
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22 </tests>
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23 <help><![CDATA[
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24 usage: PROG [-h] [--config CONFIG] [--verbose]
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25
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26 options:
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27 -h, --help show this help message and exit
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28 --config CONFIG Input configuration file
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29 --verbose verbose output
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30
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31 ]]></help>
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32 <citations>
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33 <citation type="bibtex">
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34 @misc{githubChessAnalysisPipeline,
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35 author = {LastTODO, FirstTODO},
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36 year = {TODO},
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37 title = {ChessAnalysisPipeline},
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38 publisher = {GitHub},
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39 journal = {GitHub repository},
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40 url = {https://github.com/CHESSComputing/ChessAnalysisPipeline},
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41 }</citation>
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42 </citations>
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43 </tool>