Mercurial > repos > jjohnson > snpeff_with_dep
annotate tool_dependency.xml @ 2:5248f48fa4ee
Add debug actions to tool_dependencies
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 13 Sep 2012 21:50:24 -0500 |
| parents | 388f178f9e13 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/dist</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="snpEff" version="3.0f"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action> | |
| 10 <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action> | |
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2
5248f48fa4ee
Add debug actions to tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
0
diff
changeset
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11 <action type="shell_command">pwd</action> |
|
5248f48fa4ee
Add debug actions to tool_dependencies
Jim Johnson <jj@umn.edu>
parents:
0
diff
changeset
|
12 <action type="shell_command">ls</action> |
| 0 | 13 <action type="shell_command">cp -rp * $INSTALL_DIR/dist/</action> |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 </readme> | |
| 18 </package> | |
| 19 | |
| 20 </tool_dependency> | |
| 21 |