Mercurial > repos > jjohnson > snpeff_with_dep

comparison tool_dependency.xml @ 2:5248f48fa4ee

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Add debug actions to tool_dependencies
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 21:50:24 -0500
parents 388f178f9e13
children
comparison
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1:ebe280eca4a4 2:5248f48fa4ee
6 <package name="snpEff" version="3.0f"> 6 <package name="snpEff" version="3.0f">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action> 9 <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action>
10 <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action> 10 <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action>
11 <action type="shell_command">pwd</action>
12 <action type="shell_command">ls</action>
11 <action type="shell_command">cp -rp * $INSTALL_DIR/dist/</action> 13 <action type="shell_command">cp -rp * $INSTALL_DIR/dist/</action>
12 </actions> 14 </actions>
13 </install> 15 </install>
14 <readme> 16 <readme>
15 </readme> 17 </readme>